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Roland Pache
Roland Pache
Verified email at ucsf.edu
Title
Cited by
Cited by
Year
Scientific benchmarks for guiding macromolecular energy function improvement
A Leaver-Fay, MJ O’Meara, M Tyka, R Jacak, Y Song, EH Kellogg, ...
Methods in enzymology 523, 2013
2442013
Dynamic interactions of proteins in complex networks: a more structured view
A Stein, RA Pache, P Bernado, M Pons, P Aloy
The FEBS journal 276 (19), 5390-5405, 2009
1342009
Computational design of a modular protein sense-response system
AA Glasgow, YM Huang, DJ Mandell, M Thompson, R Ritterson, ...
Science 366 (6468), 1024-1028, 2019
982019
A web resource for standardized benchmark datasets, metrics, and Rosetta protocols for macromolecular modeling and design
S ó Conchúir, KA Barlow, RA Pache, N Ollikainen, K Kundert, MJ O'Meara, ...
PLOS one 10 (9), e0130433, 2015
832015
Uncovering new substrates for Aurora A kinase
T Sardon, RA Pache, A Stein, H Molina, I Vernos, P Aloy
EMBO reports 11 (12), 977-984, 2010
762010
The role of structural disorder in the rewiring of protein interactions through evolution
R Mosca, RA Pache, P Aloy
Molecular & Cellular Proteomics 11 (7), 2012
672012
Engineering a light-activated caspase-3 for precise ablation of neurons in vivo
AD Smart, RA Pache, ND Thomsen, T Kortemme, GW Davis, JA Wells
Proceedings of the National Academy of Sciences 114 (39), E8174-E8183, 2017
622017
NetAligner—a network alignment server to compare complexes, pathways and whole interactomes
RA Pache, A Céol, P Aloy
Nucleic acids research 40 (W1), W157-W161, 2012
492012
A novel framework for the comparative analysis of biological networks
RA Pache, P Aloy
PloS one 7 (2), e31220, 2012
482012
Towards a molecular characterisation of pathological pathways
RA Pache, A Zanzoni, J Naval, JM Mas, P Aloy
FEBS letters 582 (8), 1259-1265, 2008
422008
Incorporating high‐throughput proteomics experiments into structural biology pipelines: Identification of the low‐hanging fruits
RA Pache, P Aloy
Proteomics 8 (10), 1959-1964, 2008
152008
Exploiting gene deletion fitness effects in yeast to understand the modular architecture of protein complexes under different growth conditions
RA Pache, MM Babu, P Aloy
BMC Systems Biology 3, 1-18, 2009
142009
Systematic bioinformatics and experimental validation of yeast complexes reduces the rate of attrition during structural investigations
MA Brooks, K Gewartowski, E Mitsiki, J Létoquart, RA Pache, Y Billier, ...
Structure 18 (9), 1075-1082, 2010
102010
Accurate positioning of functional residues with robotics-inspired computational protein design
C Krivacic, K Kundert, X Pan, RA Pache, L Liu, S O Conchúir, ...
Proceedings of the National Academy of Sciences 119 (11), e2115480119, 2022
82022
Module walking using an SH3-like cell-wall-binding domain leads to a new GH184 family of muramidases
OV Moroz, E Blagova, AA Lebedev, LK Skov, RA Pache, KM Schnorr, ...
Acta Crystallographica Section D: Structural Biology 79 (8), 2023
22023
Serine protease variants and polynucleotides encoding same
K Ayabe, T Matsui, A Tomiki, Y Kurakata, EP Friis, JE Nielsen, RA Pache
US Patent 10,927,361, 2021
22021
Xylanase variants and polynucleotides encoding same
S Danielsen, PK Hansen, FW Rasmussen, RA Pache
US Patent 10,208,301, 2019
22019
Increasing the precision of orthology-based complex prediction through network alignment
RA Pache, P Aloy
PeerJ 2, e413, 2014
12014
Serine protease variants and polynucleotides encoding same
DMK Klitgaard, RA Pache, M Gudman, AG Sandström
US Patent 11,891,645, 2024
2024
Stabilized cellulase variants
SG Kaasgaard, FW Rasmussen, RA Pache, L Anderson, MLD Overgaard, ...
US Patent App. 18/152,992, 2023
2023
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