| PLncPRO for prediction of long non-coding RNAs (lncRNAs) in plants and its application for discovery of abiotic stress-responsive lncRNAs in rice and chickpea U Singh, N Khemka, MS Rajkumar, R Garg, M Jain Nucleic acids research 45 (22), e183-e183, 2017 | 108 | 2017 |
| Role of miR-2392 in driving SARS-CoV-2 infection JT McDonald, FJ Enguita, D Taylor, RJ Griffin, W Priebe, MR Emmett, ... Cell reports 37 (3), 2021 | 52 | 2021 |
| orfipy: a fast and flexible tool for extracting ORFs U Singh, ES Wurtele Bioinformatics, 2021 | 43 | 2021 |
| Core mitochondrial genes are down-regulated during SARS-CoV-2 infection of rodent and human hosts JW Guarnieri, JM Dybas, H Fazelinia, MS Kim, J Frere, Y Zhang, ... Science translational medicine 15 (708), eabq1533, 2023 | 41 | 2023 |
| MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets U Singh, M Hur, K Dorman, ES Wurtele Nucleic acids research 48 (4), e23-e23, 2020 | 35 | 2020 |
| phylostratr: a framework for phylostratigraphy Z Arendsee, J Li, U Singh, A Seetharam, K Dorman, ES Wurtele Bioinformatics 35 (19), 3617-3627, 2019 | 29 | 2019 |
| System-wide transcriptome damage and tissue identity loss in COVID-19 patients J Park, J Foox, T Hether, DC Danko, S Warren, Y Kim, J Reeves, DJ Butler, ... Cell Reports Medicine 3 (2), 2022 | 28 | 2022 |
| How new genes are born U Singh, E Syrkin Wurtele Elife 9, e55136, 2020 | 28 | 2020 |
| Targeted down regulation of core mitochondrial genes during SARS-CoV-2 infection JW Guarnieri, JM Dybas, H Fazelinia, MS Kim, J Frere, Y Zhang, ... BioRxiv, 2022 | 27 | 2022 |
| Genome-Wide Transcript Profiling Reveals an Auxin-Responsive Transcription Factor, OsAP2/ERF-40, Promoting Rice Adventitious Root Development A Neogy, T Garg, A Kumar, AK Dwivedi, H Singh, U Singh, Z Singh, ... Plant and Cell Physiology 60 (10), 2343-2355, 2019 | 25 | 2019 |
| pyrpipe: a Python package for RNA-Seq workflows U Singh, J Li, A Seetharam, ES Wurtele NAR genomics and bioinformatics 3 (2), lqab049, 2021 | 21 | 2021 |
| Foster thy young: enhanced prediction of orphan genes in assembled genomes J Li, U Singh, P Bhandary, J Campbell, Z Arendsee, AS Seetharam, ... Nucleic Acids Research 50 (7), e37-e37, 2022 | 18 | 2022 |
| African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors associated with immunologic functions and environmental exposures U Singh, KM Hernandez, BJ Aronow, ES Wurtele Scientific reports 11 (1), 9905, 2021 | 18 | 2021 |
| fagin: synteny-based phylostratigraphy and finer classification of young genes Z Arendsee, J Li, U Singh, P Bhandary, A Seetharam, ES Wurtele BMC bioinformatics 20, 1-14, 2019 | 15 | 2019 |
| Landscape of the dark transcriptome revealed through re-mining massive RNA-Seq data J Li, U Singh, Z Arendsee, ES Wurtele Frontiers in Genetics 12, 722981, 2021 | 13 | 2021 |
| Systemic tissue and cellular disruption from SARS-CoV-2 infection revealed in COVID-19 autopsies and spatial omics tissue maps J Park, J Foox, T Hether, D Danko, S Warren, Y Kim, J Reeves, DJ Butler, ... bioRxiv, 2021.03. 08.434433, 2021 | 13 | 2021 |
| Ensemble of deep long short term memory networks for labelling origin of replication sequences U Singh, S Chauhan, A Krishnamachari, L Vig 2015 IEEE International Conference on Data Science and Advanced Analytics …, 2015 | 13 | 2015 |
| Maximizing prediction of orphan genes in assembled genomes A Seetharam, U Singh, J Li, P Bhandary, Z Arendsee, ES Wurtele BioRxiv, 2019.12. 17.880294, 2019 | 8 | 2019 |
| The great deceiver: miR-2392’s hidden role in driving SARS-CoV-2 infection JT McDonald, FJ Enguita, D Taylor, RA Bowen, RJ Griffin, W Priebe, ... bioRxiv, 2021.04. 23.441024, 2021 | 7 | 2021 |
| Recycling RNA-seq data to identify candidate orphan genes for experimental analysis J Li, Z Arendsee, U Singh, ES Wurtele BioRxiv, 671263, 2019 | 5 | 2019 |
Eve WurteleProfessor, Iowa State UniversityE-mail megerősítve itt: iastate.edu
