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Jan Zrimec
Jan Zrimec
National Institute of Biology, Department of Biotechnology and Systems Biology
Bestätigte E-Mail-Adresse bei nib.si - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Expanding functional protein sequence spaces using generative adversarial networks
D Repecka, V Jauniskis, L Karpus, E Rembeza, I Rokaitis, J Zrimec, ...
Nature Machine Intelligence 3 (4), 324-333, 2021
2512021
Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure
J Zrimec, CS Börlin, F Buric, AS Muhammad, R Chen, V Siewers, ...
Nature communications 11 (1), 1-16, 2020
1132020
Plastic-degrading potential across the global microbiome correlates with recent pollution trends
J Zrimec, M Kokina, S Jonasson, F Zorrilla, A Zelezniak
MBio 12 (5), e02155-21, 2021
632021
Bayesian genome scale modelling identifies thermal determinants of yeast metabolism
G Li, Y Hu, J Zrimec, H Luo, H Wang, A Zelezniak, B Ji, J Nielsen
Nature Communications 12 (1), 1-12, 2021
452021
Controlling gene expression with deep generative design of regulatory DNA
J Zrimec, X Fu, AS Muhammad, C Skrekas, V Jauniskis, NK Speicher, ...
Nature communications 13 (1), 5099, 2022
402022
Data mining of Saccharomyces cerevisiae mutants engineered for increased tolerance towards inhibitors in lignocellulosic hydrolysates
E Cámara, L Olsson, J Zrimec, A Zelezniak, C Geijer, Y Nygård
Biotechnology Advances 57, 107947, 2022
402022
Learning the regulatory code of gene expression
J Zrimec, F Buric, M Kokina, V Garcia, A Zelezniak
Frontiers in Molecular Biosciences 8, 673363, 2021
302021
DNA structure at the plasmid origin-of-transfer indicates its potential transfer range
J Zrimec, A Lapanje
Scientific Reports 8 (1), 1820, 2018
232018
Performance of regression models as a function of experiment noise
G Li, J Zrimec, B Ji, J Geng, J Larsbrink, A Zelezniak, J Nielsen, ...
Bioinformatics and Biology Insights 15, 11779322211020315, 2021
202021
Natural microbial communities can be manipulated by artificially constructed biofilms
T Rijavec, J Zrimec, R van Spanning, A Lapanje
Advanced Science 6 (22), 1901408, 2019
172019
Learning deep representations of enzyme thermal adaptation
G Li, F Buric, J Zrimec, S Viknander, J Nielsen, A Zelezniak, ...
Protein Science 31 (12), e4480, 2022
142022
Fast prediction of DNA melting bubbles using DNA thermodynamic stability
J Zrimec, A Lapanje
IEEE/ACM Transactions on Computational Biology and Bioinformatics 12 (5 …, 2015
132015
Development of Highly Sensitive, Automatized and Portable Whole-Cell Hg Biosensor Based on Environmentally Relevant Microorganisms
T Rijavec, J Zrimec, F Oven, MK Viršek, M Somrak, Z Podlesek, ...
Geomicrobiology journal 34 (7), 596-605, 2017
112017
Expanding functional protein sequence space using generative adversarial networks.
D Repecka, V Jauniskis, L Karpus, E Rembeza, J Zrimec, S Poviloniene, ...
bioRxiv, 2019
10*2019
Band smearing of PCR amplified bacterial 16S rRNA genes: Dependence on initial PCR target diversity
J Zrimec, T Rijavec, T Zrimec, A Lapanje
Journal of microbiological methods 95 (2), 186-194, 2013
102013
Determining the Virulence Properties of Escherichia coli ST131 Containing Bacteriocin-Encoding Plasmids Using Short- and Long-Read Sequencing and Comparing Them …
AC da Cruz Campos, FM Cavallo, NL Andrade, JM van Dijl, N Couto, ...
Microorganisms 7 (11), 534, 2019
92019
Multiple plasmid origin‐of‐transfer regions might aid the spread of antimicrobial resistance to human pathogens
J Zrimec
Microbiologyopen 9 (12), e1129, 2020
82020
Supervised generative design of regulatory DNA for gene expression control
J Zrimec, X Fu, AS Muhammad, C Skrekas, V Jauniskis, N Speicher, ...
bioRxiv, 2021
52021
Enhanced metabolism and negative regulation of ER stress support higher erythropoietin production in HEK293 cells
R Saghaleyni, M Malm, N Moruzzi, J Zrimec, R Razavi, N Wistbacka, ...
Cell Reports 39 (11), 110936, 2022
42022
Toward learning the principles of plant gene regulation
J Zrimec, A Zelezniak, K Gruden
Trends in Plant Science 27 (12), 1206-1208, 2022
32022
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