Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling R Pidsley, E Zotenko, TJ Peters, MG Lawrence, GP Risbridger, P Molloy, ... Genome biology 17, 1-17, 2016 | 1290 | 2016 |
Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality E Zotenko, J Mestre, DP O'Leary, TM Przytycka PLoS computational biology 4 (8), e1000140, 2008 | 485 | 2008 |
Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations PC Taberlay, J Achinger-Kawecka, ATL Lun, FA Buske, K Sabir, ... Genome research 26 (6), 719-731, 2016 | 360 | 2016 |
Methylome sequencing in triple-negative breast cancer reveals distinct methylation clusters with prognostic value C Stirzaker, E Zotenko, JZ Song, W Qu, SS Nair, WJ Locke, A Stone, ... Nature communications 6 (1), 5899, 2015 | 222 | 2015 |
DNA methylation of oestrogen-regulated enhancers defines endocrine sensitivity in breast cancer A Stone, E Zotenko, WJ Locke, D Korbie, EKA Millar, R Pidsley, ... Nature communications 6 (1), 7758, 2015 | 159 | 2015 |
Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer Q Du, SA Bert, NJ Armstrong, CE Caldon, JZ Song, SS Nair, CM Gould, ... Nature communications 10 (1), 416, 2019 | 126 | 2019 |
Predicting domain-domain interactions using a parsimony approach KS Guimarães, R Jothi, E Zotenko, TM Przytycka Genome biology 7, 1-14, 2006 | 120 | 2006 |
Identification of sequence–structure RNA binding motifs for SELEX-derived aptamers J Hoinka, E Zotenko, A Friedman, ZE Sauna, TM Przytycka Bioinformatics 28 (12), i215-i223, 2012 | 111 | 2012 |
Enduring epigenetic landmarks define the cancer microenvironment R Pidsley, MG Lawrence, E Zotenko, B Niranjan, A Statham, J Song, ... Genome research 28 (5), 625-638, 2018 | 96 | 2018 |
Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA K Skvortsova, E Zotenko, PL Luu, CM Gould, SS Nair, SJ Clark, ... Epigenetics & chromatin 10, 1-20, 2017 | 94 | 2017 |
COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations R Jothi, E Zotenko, A Tasneem, TM Przytycka Bioinformatics 22 (7), 779-788, 2006 | 87 | 2006 |
Methyl-CpG-binding protein MBD2 plays a key role in maintenance and spread of DNA methylation at CpG islands and shores in cancer C Stirzaker, JZ Song, W Ng, Q Du, NJ Armstrong, WJ Locke, AL Statham, ... Oncogene 36 (10), 1328-1338, 2017 | 84 | 2017 |
DNA hypermethylation encroachment at CpG island borders in cancer is predisposed by H3K4 monomethylation patterns K Skvortsova, E Masle-Farquhar, PL Luu, JZ Song, W Qu, E Zotenko, ... Cancer cell 35 (2), 297-314. e8, 2019 | 83 | 2019 |
A bioengineered microenvironment to quantitatively measure the tumorigenic properties of cancer-associated fibroblasts in human prostate cancer AK Clark, AV Taubenberger, RA Taylor, B Niranjan, ZY Chea, E Zotenko, ... Biomaterials 34 (20), 4777-4785, 2013 | 77 | 2013 |
Decomposition of overlapping protein complexes: A graph theoretical method for analyzing static and dynamic protein associations E Zotenko, KS Guimarães, R Jothi, TM Przytycka Algorithms for Molecular Biology 1, 1-11, 2006 | 56 | 2006 |
MicroRNA profiling of the pubertal mouse mammary gland identifies miR-184 as a candidate breast tumour suppressor gene YW Phua, A Nguyen, DL Roden, B Elsworth, N Deng, I Nikolic, J Yang, ... Breast Cancer Research 17, 1-18, 2015 | 51 | 2015 |
DNA methylation is required to maintain both DNA replication timing precision and 3D genome organization integrity Q Du, GC Smith, PL Luu, JM Ferguson, NJ Armstrong, CE Caldon, ... Cell Reports 36 (12), 2021 | 49 | 2021 |
Secondary structure spatial conformation footprint: a novel method for fast protein structure comparison and classification E Zotenko, DP O'Leary, TM Przytycka BMC Structural Biology 6, 1-12, 2006 | 37 | 2006 |
Coordinated epigenetic remodelling of transcriptional networks occurs during early breast carcinogenesis WJ Locke, E Zotenko, C Stirzaker, MD Robinson, RA Hinshelwood, ... Clinical epigenetics 7, 1-15, 2015 | 36 | 2015 |
On the applicability of elastic network normal modes in small-molecule docking M Dietzen, E Zotenko, A Hildebrandt, T Lengauer Journal of chemical information and modeling 52 (3), 844-856, 2012 | 34 | 2012 |