| Proteomic analysis of cerebrospinal fluid extracellular vesicles: A comprehensive dataset D Chiasserini, JRT van Weering, SR Piersma, TV Pham, A Malekzadeh, ... Journal of proteomics 106, 191-204, 2014 | 286 | 2014 |
| On the beta-binomial model for analysis of spectral count data in label-free tandem mass spectrometry-based proteomics TV Pham, SR Piersma, M Warmoes, CR Jimenez Bioinformatics 26 (3), 363-369, 2010 | 237 | 2010 |
| Workflow comparison for label-free, quantitative secretome proteomics for cancer biomarker discovery: method evaluation, differential analysis, and verification in serum SR Piersma, U Fiedler, S Span, A Lingnau, TV Pham, S Hoffmann, ... Journal of proteome research 9 (4), 1913-1922, 2010 | 187 | 2010 |
| Proteomic profiling of Mycobacterium tuberculosis identifies nutrient-starvation-responsive toxin–antitoxin systems J Albrethsen, J Agner, SR Piersma, P Højrup, TV Pham, K Weldingh, ... Molecular & Cellular Proteomics 12 (5), 1180-1191, 2013 | 168 | 2013 |
| Decoration of outer membrane vesicles with multiple antigens by using an autotransporter approach MH Daleke-Schermerhorn, T Felix, Z Soprova, CM ten Hagen-Jongman, ... Applied and environmental microbiology 80 (18), 5854-5865, 2014 | 130 | 2014 |
| The secretome of colon cancer stem cells contains drug-metabolizing enzymes BL Emmink, A Verheem, WJ Van Houdt, EJA Steller, KM Govaert, ... Journal of proteomics 91, 84-96, 2013 | 116 | 2013 |
| Comparative proteomics of colon cancer stem cells and differentiated tumor cells identifies BIRC6 as a potential therapeutic target WJ Van Houdt, BL Emmink, TV Pham, SR Piersma, A Verheem, RG Vries, ... Molecular & Cellular Proteomics 10 (12), 2011 | 115 | 2011 |
| Novel diagnostic cerebrospinal fluid biomarkers for pathologic subtypes of frontotemporal dementia identified by proteomics CE Teunissen, N Elias, MJA Koel-Simmelink, S Durieux-Lu, ... Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring 2, 86-94, 2016 | 105 | 2016 |
| Colorectal cancer candidate biomarkers identified by tissue secretome proteome profiling M de Wit, H Kant, SR Piersma, TV Pham, S Mongera, M van Berkel, ... Journal of proteomics 99, 26-39, 2014 | 98 | 2014 |
| Exosomes secreted by apoptosis-resistant acute myeloid leukemia (AML) blasts harbor regulatory network proteins potentially involved in antagonism of apoptosis A Wojtuszkiewicz, GJ Schuurhuis, FL Kessler, SR Piersma, JC Knol, ... Molecular & Cellular Proteomics 15 (4), 1281-1298, 2016 | 95 | 2016 |
| INKA, an integrative data analysis pipeline for phosphoproteomic inference of active kinases R Beekhof, C van Alphen, AA Henneman, JC Knol, TV Pham, F Rolfs, ... Molecular systems biology 15 (4), e8250, 2019 | 93 | 2019 |
| Exploration of the platelet proteome in patients with early-stage cancer S Sabrkhany, MJE Kuijpers, JC Knol, SWMO Damink, AMC Dingemans, ... Journal of proteomics 177, 65-74, 2018 | 91 | 2018 |
| An accurate paired sample test for count data TV Pham, CR Jimenez Bioinformatics 28 (18), i596-i602, 2012 | 87 | 2012 |
| Face detection by aggregated Bayesian network classifiers TV Pham, M Worring, AWM Smeulders Pattern Recognition Letters 23 (4), 451-461, 2002 | 87 | 2002 |
| Comparative protein profiling reveals minichromosome maintenance (MCM) proteins as novel potential tumor markers for meningiomas O Saydam, O Senol, TBM Schaaij-Visser, TV Pham, SR Piersma, ... Journal of proteome research 9 (1), 485-494, 2010 | 86 | 2010 |
| Sub-nuclear proteomics in colorectal cancer: Identification of proteins enriched in the nuclear matrix fraction and regulation in adenoma to carcinoma progression J Albrethsen, JC Knol, S Piersma, TV Pham, M de Wit, S Mongera, ... Molecular & Cellular Proteomics, 2010 | 84 | 2010 |
| iTRAQ-based proteomics profiling reveals increased metabolic activity and cellular cross-talk in angiogenic compared with invasive glioblastoma phenotype U Rajcevic, K Petersen, JC Knol, M Loos, S Bougnaud, O Klychnikov, ... Molecular & Cellular Proteomics 8 (11), 2595-2612, 2009 | 84 | 2009 |
| Proteomic and functional studies reveal detyrosinated tubulin as treatment target in sarcomere mutation-induced hypertrophic cardiomyopathy M Schuldt, J Pei, M Harakalova, LM Dorsch, S Schlossarek, M Mokry, ... Circulation: Heart Failure 14 (1), e007022, 2021 | 80 | 2021 |
| MicroRNA-124 and-137 cooperativity controls caspase-3 activity through BCL2L13 in hippocampal neural stem cells M Schouten, SA Fratantoni, CJ Hubens, SR Piersma, TV Pham, ... Scientific reports 5 (1), 12448, 2015 | 80 | 2015 |
| Proximal fluid proteome profiling of mouse colon tumors reveals biomarkers for early diagnosis of human colorectal cancer RJA Fijneman, M de Wit, M Pourghiasian, SR Piersma, TV Pham, ... Clinical Cancer Research 18 (9), 2613-2624, 2012 | 78 | 2012 |
Connie JimenezProfessor of Translational OncoProteomicsVerified email at vumc.nl
