|A genome-wide approach to link genotype to clinical outcome by utilizing next generation sequencing and gene chip data of 6,697 breast cancer patients|
L Pongor, M Kormos, C Hatzis, L Pusztai, A Szabó, B Győrffy
Genome medicine 7 (1), 104, 2015
|Predictors of chemosensitivity in triple negative breast cancer: an integrated genomic analysis|
T Jiang, W Shi, VB Wali, LS Pongor, C Li, R Lau, B Győrffy, RP Lifton, ...
PLoS medicine 13 (12), e1002193, 2016
|Enhancer mapping uncovers phenotypic heterogeneity and evolution in patients with luminal breast cancer|
DK Patten, G Corleone, B Győrffy, Y Perone, N Slaven, I Barozzi, E Erdős, ...
Nature medicine 24 (9), 1469-1480, 2018
|Wanted DEAD/H or alive: helicases winding up in cancers|
W Cai, Z Xiong Chen, G Rane, S Satendra Singh, Z Choo, C Wang, ...
JNCI: Journal of the National Cancer Institute 109 (6), 2017
|TP53 mutation hits energy metabolism and increases glycolysis in breast cancer|
H Harami-Papp, LS Pongor, G Munkácsy, G Horváth, ÁM Nagy, A Ambrus, ...
Oncotarget 7 (41), 67183, 2016
|KRAS driven expression signature has prognostic power superior to mutation status in non‐small cell lung cancer|
Á Nagy, LS Pongor, A Szabó, M Santarpia, B Győrffy
International journal of cancer 140 (4), 930-937, 2017
|An integrative bioinformatics approach reveals coding and non-coding gene variants associated with gene expression profiles and outcome in breast cancer molecular subtypes|
B Győrffy, L Pongor, G Bottai, X Li, J Budczies, A Szabó, C Hatzis, ...
British journal of cancer 118 (8), 1107-1114, 2018
|Mutations defining patient cohorts with elevated PD-L1 expression in gastric cancer|
O Menyhárt, LS Pongor, B Győrffy
Frontiers in pharmacology 9, 1522, 2019
|TPMCalculator: one-step software to quantify mRNA abundance of genomic features|
R Vera Alvarez, LS Pongor, L Marińo-Ramírez, D Landsman
Bioinformatics 35 (11), 1960-1962, 2019
|Fast and sensitive alignment of microbial whole genome sequencing reads to large sequence datasets on a desktop PC: application to metagenomic datasets and pathogen identification|
LS Pongor, R Vera, B Ligeti
PloS one 9 (7), e103441, 2014
|Cell dispersal influences tumor heterogeneity and introduces a bias in NGS data interpretation|
L Pongor, H Harami-Papp, E Méhes, A Czirók, B Győrffy
Scientific reports 7 (1), 1-10, 2017
|A snapshot of 3649 Web-based services published between 1994 and 2017 shows a decrease in availability after 2 years|
Á Ősz, LS Pongor, D Szirmai, B Győrffy
Briefings in bioinformatics 20 (3), 1004-1010, 2019
|MGMT Status as a Clinical Biomarker in Glioblastoma|
M Butler, L Pongor, YT Su, L Xi, M Raffeld, M Quezado, J Trepel, K Aldape, ...
Trends in Cancer, 2020
|SCLC_CellMiner: integrated genomics and therapeutics predictors of small cell lung cancer cell lines based on their genomic signatures|
C Tlemsani, LS Pongor, L Girard, S Varma, A Luna, V Rajapakse, ...
|Uncovering Potential Therapeutic Targets in Colorectal Cancer by Deciphering Mutational Status and Expression of Druggable Oncogenes|
O Menyhart, T Kakisaka, LS Pongor, H Uetake, A Goel, B Győrffy
Cancers 11 (7), 983, 2019
|Effect of DNA hypermethylation on immune escape through downregulation of antigen presentation genes in breast cancer.|
B Gyorffy, A Nagy, L Pongor, A Locatelli, L Vigano', AM Safonov, L Pusztai, ...
Journal of Clinical Oncology 34 (15_suppl), 11547-11547, 2016
|BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks|
LS Pongor, JM Gross, R Vera Alvarez, J Murai, SM Jang, H Zhang, ...
Epigenetics & chromatin 13, 1-13, 2020
|Association of Sperm-Associated Antigen 5 and Treatment Response in Patients With Estrogen Receptor–Positive Breast Cancer|
TMA Abdel-Fatah, GR Ball, PU Thangavelu, LE Reid, AEMC Reed, ...
JAMA network open 3 (7), e209486-e209486, 2020
|Chromatin Remodeling and Immediate Early Gene Activation by SLFN11 in Response to Replication Stress|
J Murai, H Zhang, L Pongor, SW Tang, U Jo, F Moribe, Y Ma, M Tomita, ...
Cell reports 30 (12), 4137-4151. e6, 2020
|Currently favored sampling practices for tumor sequencing can produce optimal results in the clinical setting|
LS Pongor, G Munkácsy, I Vereczkey, I Pete, B Győrffy
Scientific RepoRtS 10 (1), 1-8, 2020