Gergely Nagy
Gergely Nagy
Verified email at med.unideb.hu
Title
Cited by
Cited by
Year
The transcription factor STAT6 mediates direct repression of inflammatory enhancers and limits activation of alternatively polarized macrophages
Z Czimmerer, B Daniel, A Horvath, D Rückerl, G Nagy, M Kiss, M Peloquin, ...
Immunity 48 (1), 75-90. e6, 2018
812018
Research resource: transcriptome profiling of genes regulated by RXR and its permissive and nonpermissive partners in differentiating monocyte-derived dendritic cells
L Széles, S Póliska, G Nagy, I Szatmari, A Szanto, A Pap, M Lindstedt, ...
Molecular endocrinology 24 (11), 2218-2231, 2010
752010
The active enhancer network operated by liganded RXR supports angiogenic activity in macrophages
B Daniel, G Nagy, N Hah, A Horvath, Z Czimmerer, S Poliska, T Gyuris, ...
Genes & development 28 (14), 1562-1577, 2014
712014
Macrophage PPARγ, a lipid activated transcription factor controls the growth factor GDF3 and skeletal muscle regeneration
T Varga, R Mounier, A Patsalos, P Gogolák, M Peloquin, A Horvath, A Pap, ...
Immunity 45 (5), 1038-1051, 2016
682016
The nuclear receptor PPARγ controls progressive macrophage polarization as a ligand-insensitive epigenomic ratchet of transcriptional memory
B Daniel, G Nagy, Z Czimmerer, A Horvath, DW Hammers, ...
Immunity 49 (4), 615-626. e6, 2018
412018
Highly efficient differentiation of embryonic stem cells into adipocytes by ascorbic acid
I Cuaranta-Monroy, Z Simandi, Z Kolostyak, QM Doan-Xuan, S Poliska, ...
Stem Cell Research 13 (1), 88-97, 2014
342014
Inducible super-enhancers are organized based on canonical signal-specific transcription factor binding elements
D Bojcsuk, G Nagy, BL Balint
Nucleic acids research 45 (7), 3693-3706, 2017
312017
The IL-4/STAT6 signaling axis establishes a conserved microRNA signature in human and mouse macrophages regulating cell survival via miR-342-3p
Z Czimmerer, T Varga, M Kiss, CO Vázquez, QM Doan-Xuan, D Rückerl, ...
Genome medicine 8 (1), 1-22, 2016
292016
The intriguing complexities of mammalian gene regulation: How to link enhancers to regulated genes. Are we there yet?
B Daniel, G Nagy, L Nagy
FEBS letters 588 (15), 2379-2391, 2014
242014
Motif oriented high-resolution analysis of ChIP-seq data reveals the topological order of CTCF and cohesin proteins on DNA
G Nagy, E Czipa, L Steiner, T Nagy, S Pongor, L Nagy, E Barta
BMC genomics 17 (1), 1-9, 2016
232016
The IL-4/STAT6/PPARγ signaling axis is driving the expansion of the RXR heterodimer cistrome, providing complex ligand responsiveness in macrophages
B Daniel, G Nagy, A Horvath, Z Czimmerer, I Cuaranta-Monroy, S Poliska, ...
Nucleic acids research 46 (9), 4425-4439, 2018
222018
Retinoid X receptor suppresses a metastasis-promoting transcriptional program in myeloid cells via a ligand-insensitive mechanism
M Kiss, Z Czimmerer, G Nagy, P Bieniasz-Krzywiec, M Ehling, A Pap, ...
Proceedings of the National Academy of Sciences 114 (40), 10725-10730, 2017
142017
A novel method to predict regulatory regions based on histone mark landscapes in macrophages
G Nagy, B Dániel, D Jónás, L Nagy, E Barta
Immunobiology 218 (11), 1416-1427, 2013
132013
The BACH1–HMOX1 Regulatory Axis Is Indispensable for Proper Macrophage Subtype Specification and Skeletal Muscle Regeneration
A Patsalos, P Tzerpos, L Halasz, G Nagy, A Pap, N Giannakis, K Lyroni, ...
The Journal of Immunology 203 (6), 1532-1547, 2019
72019
Extensive and functional overlap of the STAT6 and RXR cistromes in the active enhancer repertoire of human CD14+ monocyte derived differentiating macrophages
Z Czimmerer, ZS Nagy, G Nagy, A Horvath, T Silye-Cseh, A Kriston, ...
Molecular and cellular endocrinology 471, 63-74, 2018
72018
Specific enhancer selection by IRF3, IRF5 and IRF9 is determined by ISRE half-sites, 5′ and 3′ flanking bases, collaborating transcription factors and the chromatin …
M Csumita, A Csermely, A Horvath, G Nagy, F Monori, L Göczi, HA Orbea, ...
Nucleic acids research 48 (2), 589-604, 2020
62020
Dynamic transcriptional control of macrophage miRNA signature via inflammation responsive enhancers revealed using a combination of next generation sequencing-based approaches
Z Czimmerer, A Horvath, B Daniel, G Nagy, I Cuaranta-Monroy, M Kiss, ...
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1861 (1), 14-28, 2018
52018
The transcription factor EGR2 is the molecular linchpin connecting STAT6 activation to the late, stable epigenomic program of alternative macrophage polarization
B Daniel, Z Czimmerer, L Halasz, P Boto, Z Kolostyak, S Poliska, ...
Genes & Development 34 (21-22), 1474-1492, 2020
32020
Unraveling the Hierarchy of cis and trans Factors That Determine the DNA Binding by Peroxisome Proliferator-Activated Receptor γ
G Nagy, B Daniel, I Cuaranta-Monroy, L Nagy
Molecular and cellular biology 40 (7), 2020
32020
Motif grammar: The basis of the language of gene expression
G Nagy, L Nagy
Computational and Structural Biotechnology Journal 18, 2026, 2020
22020
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Articles 1–20