Gergely Nagy
Gergely Nagy
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The transcription factor STAT6 mediates direct repression of inflammatory enhancers and limits activation of alternatively polarized macrophages
Z Czimmerer, B Daniel, A Horvath, D Rückerl, G Nagy, M Kiss, M Peloquin, ...
Immunity 48 (1), 75-90. e6, 2018
Research resource: transcriptome profiling of genes regulated by RXR and its permissive and nonpermissive partners in differentiating monocyte-derived dendritic cells
L Széles, S Póliska, G Nagy, I Szatmari, A Szanto, A Pap, M Lindstedt, ...
Molecular endocrinology 24 (11), 2218-2231, 2010
The active enhancer network operated by liganded RXR supports angiogenic activity in macrophages
B Daniel, G Nagy, N Hah, A Horvath, Z Czimmerer, S Poliska, T Gyuris, ...
Genes & development 28 (14), 1562-1577, 2014
Macrophage PPARγ, a lipid activated transcription factor controls the growth factor GDF3 and skeletal muscle regeneration
T Varga, R Mounier, A Patsalos, P Gogolák, M Peloquin, A Horvath, A Pap, ...
Immunity 45 (5), 1038-1051, 2016
The nuclear receptor PPARγ controls progressive macrophage polarization as a ligand-insensitive epigenomic ratchet of transcriptional memory
B Daniel, G Nagy, Z Czimmerer, A Horvath, DW Hammers, ...
Immunity 49 (4), 615-626. e6, 2018
Highly efficient differentiation of embryonic stem cells into adipocytes by ascorbic acid
I Cuaranta-Monroy, Z Simandi, Z Kolostyak, QM Doan-Xuan, S Poliska, ...
Stem Cell Research 13 (1), 88-97, 2014
Inducible super-enhancers are organized based on canonical signal-specific transcription factor binding elements
D Bojcsuk, G Nagy, BL Balint
Nucleic acids research 45 (7), 3693-3706, 2017
The IL-4/STAT6 signaling axis establishes a conserved microRNA signature in human and mouse macrophages regulating cell survival via miR-342-3p
Z Czimmerer, T Varga, M Kiss, CO Vázquez, QM Doan-Xuan, D Rückerl, ...
Genome medicine 8 (1), 1-22, 2016
The intriguing complexities of mammalian gene regulation: How to link enhancers to regulated genes. Are we there yet?
B Daniel, G Nagy, L Nagy
FEBS letters 588 (15), 2379-2391, 2014
Motif oriented high-resolution analysis of ChIP-seq data reveals the topological order of CTCF and cohesin proteins on DNA
G Nagy, E Czipa, L Steiner, T Nagy, S Pongor, L Nagy, E Barta
BMC genomics 17 (1), 1-9, 2016
The IL-4/STAT6/PPARγ signaling axis is driving the expansion of the RXR heterodimer cistrome, providing complex ligand responsiveness in macrophages
B Daniel, G Nagy, A Horvath, Z Czimmerer, I Cuaranta-Monroy, S Poliska, ...
Nucleic acids research 46 (9), 4425-4439, 2018
Retinoid X receptor suppresses a metastasis-promoting transcriptional program in myeloid cells via a ligand-insensitive mechanism
M Kiss, Z Czimmerer, G Nagy, P Bieniasz-Krzywiec, M Ehling, A Pap, ...
Proceedings of the National Academy of Sciences 114 (40), 10725-10730, 2017
A novel method to predict regulatory regions based on histone mark landscapes in macrophages
G Nagy, B Dániel, D Jónás, L Nagy, E Barta
Immunobiology 218 (11), 1416-1427, 2013
The BACH1–HMOX1 Regulatory Axis Is Indispensable for Proper Macrophage Subtype Specification and Skeletal Muscle Regeneration
A Patsalos, P Tzerpos, L Halasz, G Nagy, A Pap, N Giannakis, K Lyroni, ...
The Journal of Immunology 203 (6), 1532-1547, 2019
Extensive and functional overlap of the STAT6 and RXR cistromes in the active enhancer repertoire of human CD14+ monocyte derived differentiating macrophages
Z Czimmerer, ZS Nagy, G Nagy, A Horvath, T Silye-Cseh, A Kriston, ...
Molecular and cellular endocrinology 471, 63-74, 2018
Specific enhancer selection by IRF3, IRF5 and IRF9 is determined by ISRE half-sites, 5′ and 3′ flanking bases, collaborating transcription factors and the chromatin …
M Csumita, A Csermely, A Horvath, G Nagy, F Monori, L Göczi, HA Orbea, ...
Nucleic acids research 48 (2), 589-604, 2020
Dynamic transcriptional control of macrophage miRNA signature via inflammation responsive enhancers revealed using a combination of next generation sequencing-based approaches
Z Czimmerer, A Horvath, B Daniel, G Nagy, I Cuaranta-Monroy, M Kiss, ...
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1861 (1), 14-28, 2018
The transcription factor EGR2 is the molecular linchpin connecting STAT6 activation to the late, stable epigenomic program of alternative macrophage polarization
B Daniel, Z Czimmerer, L Halasz, P Boto, Z Kolostyak, S Poliska, ...
Genes & Development 34 (21-22), 1474-1492, 2020
Unraveling the Hierarchy of cis and trans Factors That Determine the DNA Binding by Peroxisome Proliferator-Activated Receptor γ
G Nagy, B Daniel, I Cuaranta-Monroy, L Nagy
Molecular and cellular biology 40 (7), 2020
Motif grammar: The basis of the language of gene expression
G Nagy, L Nagy
Computational and Structural Biotechnology Journal 18, 2026, 2020
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