Alberto Paccanaro
Alberto Paccanaro
E-mail megerősítve itt: cs.rhul.ac.uk - Kezdőlap
Hivatkozott rá
Hivatkozott rá
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
NJ Krogan, G Cagney, H Yu, G Zhong, X Guo, A Ignatchenko, J Li, S Pu, ...
Nature 440 (7084), 637-643, 2006
Detecting overlapping protein complexes in protein-protein interaction networks
T Nepusz, H Yu, A Paccanaro
Nature methods 9 (5), 471-472, 2012
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
A census of human soluble protein complexes
PC Havugimana, GT Hart, T Nepusz, H Yang, AL Turinsky, Z Li, PI Wang, ...
Cell 150 (5), 1068-1081, 2012
Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins
P Hu, SC Janga, M Babu, JJ Díaz-Mejía, G Butland, W Yang, O Pogoutse, ...
PLoS biology 7 (4), e1000096, 2009
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17, 1-19, 2016
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20, 1-23, 2019
Assessing the limits of genomic data integration for predicting protein networks
LJ Lu, Y Xia, A Paccanaro, H Yu, M Gerstein
Genome research 15 (7), 945-953, 2005
Quantifying environmental adaptation of metabolic pathways in metagenomics
TA Gianoulis, J Raes, PV Patel, R Bjornson, JO Korbel, I Letunic, ...
Proceedings of the National Academy of Sciences 106 (5), 1374-1379, 2009
Spectral clustering of protein sequences
A Paccanaro, JA Casbon, MAS Saqi
Nucleic acids research 34 (5), 1571-1580, 2006
Predicting interactions in protein networks by completing defective cliques
H Yu, A Paccanaro, V Trifonov, M Gerstein
Bioinformatics 22 (7), 823-829, 2006
Clustering of Pseudomonas aeruginosa transcriptomes from planktonic cultures, developing and mature biofilms reveals distinct expression profiles
RD Waite, A Paccanaro, A Papakonstantinopoulou, JM Hurst, M Saqi, ...
BMC genomics 7, 1-14, 2006
Learning distributed representations of concepts using linear relational embedding
A Paccanaro, GE Hinton
IEEE Transactions on Knowledge and Data Engineering 13 (2), 232-244, 2001
Predicting essential genes in fungal genomes
M Seringhaus, A Paccanaro, A Borneman, M Snyder, M Gerstein
Genome research 16 (9), 1126-1135, 2006
mutation3D: cancer gene prediction through atomic clustering of coding variants in the structural proteome
MJ Meyer, R Lapcevic, AE Romero, M Yoon, J Das, JF Beltrán, M Mort, ...
Human mutation 37 (5), 447-456, 2016
OsWRKY22, a monocot WRKY gene, plays a role in the resistance response to blast
P Abbruscato, T Nepusz, L Mizzi, M Del Corvo, P Morandini, I Fumasoni, ...
Molecular plant pathology 13 (8), 828-841, 2012
Improving GO semantic similarity measures by exploring the ontology beneath the terms and modelling uncertainty
H Yang, T Nepusz, A Paccanaro
Bioinformatics 28 (10), 1383-1389, 2012
Exploring the evolutionary path of plant MAPK networks
R Dóczi, L Ökrész, AE Romero, A Paccanaro, L Bögre
Trends in plant science 17 (9), 518-525, 2012
Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions
ZD Zhang, A Paccanaro, Y Fu, S Weissman, Z Weng, J Chang, M Snyder, ...
Genome research 17 (6), 787-797, 2007
Predicting the frequencies of drug side effects
D Galeano, S Li, M Gerstein, A Paccanaro
Nature communications 11 (1), 4575, 2020
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Cikkek 1–20