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Johannes Schindelin
Johannes Schindelin
Unknown affiliation
Verified email at wisc.edu
Title
Cited by
Cited by
Year
Fiji: an open-source platform for biological-image analysis
J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ...
Nature methods 9 (7), 676-682, 2012
548502012
ImageJ2: ImageJ for the next generation of scientific image data
CT Rueden, J Schindelin, MC Hiner, BE DeZonia, AE Walter, ET Arena, ...
BMC bioinformatics 18, 1-26, 2017
56282017
TrackMate: An open and extensible platform for single-particle tracking
JY Tinevez, N Perry, J Schindelin, GM Hoopes, GD Reynolds, ...
Methods 115, 80-90, 2017
29132017
The ImageJ ecosystem: An open platform for biomedical image analysis
J Schindelin, CT Rueden, MC Hiner, KW Eliceiri
Molecular reproduction and development 82 (7-8), 518-529, 2015
26762015
Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification
I Arganda-Carreras, V Kaynig, C Rueden, KW Eliceiri, J Schindelin, ...
Bioinformatics 33 (15), 2424-2426, 2017
19622017
A new metric for probability distributions
DM Endres, JE Schindelin
IEEE Transactions on Information theory 49 (7), 1858-1860, 2003
13502003
TrakEM2 software for neural circuit reconstruction
A Cardona, S Saalfeld, J Schindelin, I Arganda-Carreras, S Preibisch, ...
PloS one 7 (6), e38011, 2012
9602012
A high-level 3D visualization API for Java and ImageJ
B Schmid, J Schindelin, A Cardona, M Longair, M Heisenberg
BMC bioinformatics 11, 1-7, 2010
5862010
Software for bead-based registration of selective plane illumination microscopy data
S Preibisch, S Saalfeld, J Schindelin, P Tomancak
Nature methods 7 (6), 418-419, 2010
4432010
OpenSPIM: an open-access light-sheet microscopy platform
PG Pitrone, J Schindelin, L Stuyvenberg, S Preibisch, M Weber, ...
Nature methods 10 (7), 598-599, 2013
3682013
Crowdsourcing the creation of image segmentation algorithms for connectomics
I Arganda-Carreras, SC Turaga, DR Berger, D Cireşan, A Giusti, ...
Frontiers in neuroanatomy 9, 152591, 2015
3562015
A Doppler effect in embryonic pattern formation
D Soroldoni, DJ Jörg, LG Morelli, DL Richmond, J Schindelin, F Jülicher, ...
Science 345 (6193), 222-225, 2014
1372014
C., Saalfeld, S., Schmid, B., Tinevez, J
J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ...
Y., White, DJ, Hartenstein, V., Eliceiri, K., Tomancak, P. & Cardona, A, 676-682, 2012
1052012
MIJ: making interoperability between ImageJ and Matlab possible
D Sage, D Prodanov, JY Tinevez, J Schindelin
ImageJ User & Developer Conference 2426, 2012
772012
Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts
A Cardona, S Saalfeld, I Arganda, W Pereanu, J Schindelin, V Hartenstein
Journal of Neuroscience 30 (22), 7538-7553, 2010
682010
The Virtual Insect Brain protocol: creating and comparing standardized neuroanatomy
A Jenett, JE Schindelin, M Heisenberg
BMC bioinformatics 7, 1-12, 2006
672006
Fiji is just ImageJ-Batteries included
J Schindelin
Proceedings of the ImageJ User and Developer Conference, Luxembourg, 2008
662008
714 Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A. 2012. 715 Fiji: an open-source platform for biological-image analysis
J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ...
Nat Methods 9, 676-682, 0
49
Cooperativity among Rev-associated nuclear export signals regulates HIV-1 gene expression and is a determinant of virus species tropism
M Aligeti, RT Behrens, GM Pocock, J Schindelin, C Dietz, KW Eliceiri, ...
Journal of Virology 88 (24), 14207-14221, 2014
302014
Bayesian binning beats approximate alternatives: estimating peri-stimulus time histograms
D Endres, M Oram, J Schindelin, P Foldiak
Advances in neural information processing systems 20, 2007
272007
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