Andrei Zinovyev

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Citations	10445	6555
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Emmanuel BarillotInstitut Curie, INSERM, Mines ParisTech, U900Verified email at curie.fr
Alexander N. GorbanProfessor of Applied Mathematics, University of Leicester, UKVerified email at le.ac.uk
Inna KupersteinInstitut Curie, Paris, FranceVerified email at curie.fr
Maria Kondratovainstitute CurieVerified email at curie.fr
Laura CantiniChargé de Recherce CNRS, Junior Group Leader (G5) Institut PasteurVerified email at pasteur.fr
Loredana MartignettiInstitut Curie / Inserm U900Verified email at curie.fr
Ulykbek KairovLeading Research Scientist, Lab of Bioinformatics and Systems Biology, Nazarbayev UniversityVerified email at nu.edu.kz
Gautier StollINSERM U1138, Université Paris Descartes, Gustave RoussyVerified email at upmc.fr
Jean-Philippe VertOwkin / PSL UniversityVerified email at mines-paristech.fr
Ovidiu RadulescuProfessor at University of MontpellierVerified email at umontpellier.fr
Eric BonnetComputational biologist and team leader, Centre National de Recherche en Génomique Humaine (CNRGH)Verified email at cng.fr
Luca AlberganteWaltham Petcare Science InstituteVerified email at effem.com
Evgeny MirkesSchool of Computing and Mathematical Sciences , University of Leicester, UKVerified email at le.ac.uk
Urszula CzerwińskaInstitut Curie, U900, Inserm, PSL, Paris Descartes, Center for Interdisciplinary researchVerified email at curie.fr
Valentina BoevaAssistant Prof., ETH Zürich, Department of Computer ScienceVerified email at inf.ethz.ch
Franck TirodeCancer Research Center of Lyon, Centre Léon BérardVerified email at lyon.unicancer.fr
Jonathan BacInstitut CurieVerified email at cri-paris.org
Donald C Wunsch IIMissouri University of Science and TechnologyVerified email at mst.edu
Denis ThieffryProfessor of Systems Biology, Institut de Biologie de l'Ecole Normale Supérieure (IBENS), ParisVerified email at ens.fr
KEPES FrançoisNational Academy of Technologies of France; French Academy of AgricultureVerified email at academie-technologies.fr

Andrei Zinovyev

In silico R&D Evotec, Institut Curie, PRAIRIE

Verified email at evotec.com - Homepage

Machine Learning Cancer Systems Biology Model Reduction Mathematical Oncology Data analysis


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Fibroblast heterogeneity and immunosuppressive environment in human breast cancer A Costa, Y Kieffer, A Scholer-Dahirel, F Pelon, B Bourachot, M Cardon, ... Cancer cell 33 (3), 463-479. e10, 2018	990	2018
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... Nature protocols 14 (3), 639-702, 2019	788	2019
Principal manifolds for data visualization and dimension reduction, Lecture notes in computational science & engineering, Vol 58 AN Gorban, B Kgl, DC Wunsch, A Zinovyev Lecture notes in computational science & engineering, 2008	629*	2008
Codon adaptation index as a measure of dominating codon bias A Carbone, A Zinovyev, F Képes Bioinformatics 19 (16), 2005-2015, 2003	397	2003
Single-cell analysis reveals fibroblast clusters linked to immunotherapy resistance in CancerFAP+ CAF diversity and immunotherapy response Y Kieffer, HR Hocine, G Gentric, F Pelon, C Bernard, B Bourachot, ... Cancer Discovery 10 (9), 1330-1351, 2020	336	2020
Vizualizatsiya mnogomernykh dannykh (Visualization of multidimensional data) AY Zinovyev Krasnoyarsk, Krasnoyarsk State Technical University Publ, 2000	332*	2000
Classification of microarray data using gene networks F Rapaport, A Zinovyev, M Dutreix, E Barillot, JP Vert BMC bioinformatics 8, 1-15, 2007	322	2007
Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization V Boeva, A Zinovyev, K Bleakley, JP Vert, I Janoueix-Lerosey, O Delattre, ... Bioinformatics 27 (2), 268-269, 2011	293	2011
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease A Noronha, J Modamio, Y Jarosz, N Sompairac, GP Gonzalez, ... Nucleic Acids Reseach, 2018	251	2018
Mathematical modelling of cell-fate decision in response to death receptor engagement L Calzone, L Tournier, S Fourquet, D Thieffry, B Zhivotovsky, E Barillot, ... PLoS computational biology 6 (3), e1000702, 2010	217	2010
The oncogenic EWS-FLI1 protein binds in vivo GGAA microsatellite sequences with potential transcriptional activation function N Guillon, F Tirode, V Boeva, A Zynovyev, E Barillot, O Delattre PloS one 4 (3), e4932, 2009	200	2009
Independent component analysis uncovers the landscape of the bladder tumor transcriptome and reveals insights into luminal and basal subtypes A Biton, I Bernard-Pierrot, Y Lou, C Krucker, E Chapeaublanc, ... Cell reports 9 (4), 1235-1245, 2014	195	2014
Constructive methods of invariant manifolds for kinetic problems AN Gorban, IV Karlin, AY Zinovyev Physics Reports 396 (4), 197-403, 2004	191	2004
Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM H Chen, L Albergante, JY Hsu, CA Lareau, G Lo Bosco, J Guan, S Zhou, ... Nature communications 10 (1), 1903, 2019	179	2019
Principal manifolds and graphs in practice: from molecular biology to dynamical systems AN Gorban, A Zinovyev International Journal of Neural Systems 20 (3), 219-232, 2010	178	2010
Kinetic signatures of microRNA modes of action N Morozova, A Zinovyev, N Nonne, LL Pritchard, AN Gorban, ... RNA 18 (9), 032284, 2012	172	2012
Principal graphs and manifolds AN Gorban, AY Zinovyev Handbook of Research on Machine Learning Applications and Trends: Algorithms …, 2009	167*	2009
Computational systems biology of cancer E Barillot, L Calzone, P Hupe, JP Vert, A Zinovyev Chapman & Hall, CRC Mathematical & Computational B 47, 461, 2012	159	2012
A comprehensive modular map of molecular interactions in RB/E2F pathway L Calzone, A Gelay, A Zinovyev, F Radvanyi, E Barillot Molecular systems biology 4 (1), 0174, 2008	156	2008
Atlas of Cancer Signalling Network: a systems biology resource for integrative analysis of cancer data with Google Maps I Kuperstein, E Bonnet, HA Nguyen, D Cohen, E Viara, L Grieco, ... Oncogenesis 4 (7), e160-e160, 2015	141	2015

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