Követés
Davit Potoyan
Davit Potoyan
Assistant Professor, Iowa State University
E-mail megerősítve itt: iastate.edu - Kezdőlap
Cím
Hivatkozott rá
Hivatkozott rá
Év
Recent successes in coarse‐grained modeling of DNA
DA Potoyan, A Savelyev, GA Papoian
Wiley Interdisciplinary Reviews: Computational Molecular Science, 2013
1102013
Energy landscape analyses of disordered histone tails reveal special organization of their conformational dynamics
DA Potoyan, GA Papoian
Journal of the American Chemical Society 133 (19), 7405-7415, 2011
1102011
Anomalous diffusion, spatial coherence, and viscoelasticity from the energy landscape of human chromosomes
M Di Pierro, DA Potoyan, PG Wolynes, JN Onuchic
Proceedings of the National Academy of Sciences 115 (30), 7753-7758, 2018
1042018
Phase transition of RNA− protein complexes into ordered hollow condensates
I Alshareedah, MM Moosa, M Raju, DA Potoyan, PR Banerjee
Proceedings of the National Academy of Sciences 117 (27), 15650-15658, 2020
972020
Regulation of the H4 tail binding and folding landscapes via Lys-16 acetylation
DA Potoyan, GA Papoian
Proceedings of the National Academy of Sciences, 2012
862012
Sequence-encoded and composition-dependent protein-RNA interactions control multiphasic condensate morphologies
T Kaur, M Raju, I Alshareedah, RB Davis, DA Potoyan, PR Banerjee
Nature communications 12 (1), 1-16, 2021
832021
Molecular stripping in the NF-κB/IκB/DNA genetic regulatory network
DA Potoyan, W Zheng, EA Komives, PG Wolynes
Proceedings of the National Academy of Sciences 113 (1), 110-115, 2016
752016
The acetylation landscape of the H4 histone tail: disentangling the interplay between the specific and cumulative effects
D Winogradoff, I Echeverria, DA Potoyan, GA Papoian
Journal of the American Chemical Society 137 (19), 6245-6253, 2015
652015
Programmable viscoelasticity in protein-RNA condensates with disordered sticker-spacer polypeptides
I Alshareedah, MM Moosa, M Pham, DA Potoyan, PR Banerjee
Nature communications 12 (1), 1-14, 2021
432021
A stochastic and dynamical view of pluripotency in mouse embryonic stem cells
YT Lin, PG Hufton, EJ Lee, DA Potoyan
PLoS computational biology 14 (2), e1006000, 2018
412018
On the dephasing of genetic oscillators
D Potoyan, P Wolynes
Proceedings of the National Academy of Sciences 111, 2391-2396, 2014
352014
Computing free energy of a large-scale allosteric transition in adenylate kinase using all atom explicit solvent simulations
DA Potoyan, PI Zhuravlev, GA Papoian
The Journal of Physical Chemistry B 116 (5), 1709-1715, 2012
262012
Resolving the NFκB heterodimer binding paradox: Strain and frustration guide the binding of dimeric transcription factors
DA Potoyan, C Bueno, W Zheng, EA Komives, PG Wolynes
Journal of the American Chemical Society 139 (51), 18558-18566, 2017
252017
Molecular stripping, targets and decoys as modulators of oscillations in the NF-κB/IκBα/DNA genetic network
Z Wang, DA Potoyan, PG Wolynes
Journal of The Royal Society Interface 13 (122), 20160606, 2016
222016
Dichotomous noise models of gene switches
DA Potoyan, PG Wolynes
The Journal of chemical physics 143 (19), 11B612_1, 2015
212015
PEST control of molecular stripping of NFκB from DNA transcription sites
DA Potoyan, W Zheng, DU Ferreiro, PG Wolynes, EA Komives
The Journal of Physical Chemistry B 120 (33), 8532-8538, 2016
202016
The interplay of chromatin phase separation and lamina interactions in nuclear organization
R Laghmach, M Di Pierro, DA Potoyan
Biophysical Journal 120, 5005–5017, 2021
192021
Mesoscale liquid model of chromatin recapitulates nuclear order of eukaryotes.
R Laghmach, M Di Pierro, DA Potoyan
Biophysical Journal 117, 1-11, 2019
182019
Computing free energies of protein conformations from explicit solvent simulations
PI Zhuravlev, S Wu, DA Potoyan, M Rubinstein, GA Papoian
Methods 52 (1), 115-121, 2010
152010
Hybrid thermophilic/mesophilic enzymes reveal a role for conformational disorder in regulation of bacterial Enzyme I
RR Dotas, TT Nguyen, CE Stewart Jr, R Ghirlando, DA Potoyan, V Venditti
Journal of molecular biology 432 (16), 4481-4498, 2020
132020
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Cikkek 1–20