françois serra
françois serra
3D Chromatin Organization - IJC
Verified email at - Homepage
Cited by
Cited by
ETE 3: reconstruction, analysis, and visualization of phylogenomic data
J Huerta-Cepas, F Serra, P Bork
Molecular biology and evolution 33 (6), 1635-1638, 2016
Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation
F Le Dily, D Bau, A Pohl, GP Vicent, F Serra, D Soronellas, G Castellano, ...
Genes & development 28 (19), 2151-2162, 2014
Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming
R Stadhouders, E Vidal, F Serra, B Di Stefano, F Le Dily, J Quilez, ...
Nature Genetics, 1, 2018
Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors
F Serra, D Baù, M Goodstadt, D Castillo, GJ Filion, MA Marti-Renom
PLoS computational biology 13 (7), e1005665, 2017
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing
R Sánchez, F Serra, J Tárraga, I Medina, J Carbonell, L Pulido, ...
Nucleic Acids Research 39 (suppl 2), W470, 2011
Role of tomato BRANCHED1‐like genes in the control of shoot branching
M Martín‐Trillo, EG Grandío, F Serra, F Marcel, ML Rodríguez‐Buey, ...
The Plant Journal, 2011
The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia
R Beekman, V Chapaprieta, N Russiñol, R Vilarrasa-Blasi, ...
Nature medicine 24 (6), 868-880, 2018
4D genome rewiring during oncogene-induced and replicative senescence
S Sati, B Bonev, Q Szabo, D Jost, P Bensadoun, F Serra, V Loubiere, ...
Molecular cell 78 (3), 522-538. e9, 2020
Restraint-based three-dimensional modeling of genomes and genomic domains
F Serra, M Di Stefano, YG Spill, Y Cuartero, M Goodstadt, D Baù, ...
FEBS letters 589 (20), 2987-2995, 2015
Assessing the limits of restraint-based 3D modeling of genomes and genomic domains
M Trussart, F Serra, D Bau, I Junier, L Serrano, MA Marti-Renom
Nucleic acids research 43 (7), 3465-3477, 2015
Transcriptional activation during cell reprogramming correlates with the formation of 3D open chromatin hubs
M Di Stefano, R Stadhouders, I Farabella, D Castillo, F Serra, T Graf, ...
Nature communications 11 (1), 2564, 2020
Evolution of the biosynthesis of di‐myo‐inositol phosphate, a marker of adaptation to hot marine environments
LG Gonçalves, N Borges, F Serra, PL Fernandes, H Dopazo, H Santos
Environmental Microbiology 14 (3), 691-701, 2012
Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group
N Lavagnino, F Serra, L Arbiza, H Dopazo, E Hasson
Evolutionary bioinformatics online 8, 89, 2012
Recent human evolution has shaped geographical differences in susceptibility to disease
UM Marigorta, O Lao, F Casals, F Calafell, C Morcillo-Suárez, R Faria, ...
BMC genomics 12 (1), 1-14, 2011
Sexual selection halts the relaxation of protamine 2 among rodents
L Lüke, A Vicens, F Serra, JJ Luque-Larena, H Dopazo, ERS Roldan, ...
PLoS one 6 (12), e29247, 2011
3D modeling of chromatin structure: is there a way to integrate and reconcile single cell and population experimental data?
F Le Dily, F Serra, MA Marti‐Renom
Wiley Interdisciplinary Reviews: Computational Molecular Science 7 (5), e1308, 2017
Selective constraints on protamine 2 in primates and rodents
L Lüke, M Tourmente, H Dopazo, F Serra, ERS Roldan
BMC Evolutionary Biology 16, 1-11, 2016
Neutral theory predicts the relative abundance and diversity of genetic elements in a broad array of eukaryotic genomes
F Serra, V Becher, H Dopazo
PLoS One 8 (6), e63915, 2013
STAG2 loss-of-function affects short-range genomic contacts and modulates the basal-luminal transcriptional program of bladder cancer cells
L Richart, E Lapi, V Pancaldi, M Cuenca-Ardura, ECS Pau, ...
Nucleic Acids Research 49 (19), 11005-11021, 2021
Positive Selection in Nucleoporins Challenges Constraints on Early Expressed Genes in Drosophila Development
J Mensch, F Serra, NJ Lavagnino, H Dopazo, E Hasson
Genome biology and evolution 5 (11), 2231-2241, 2013
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