| Transcription factors: from enhancer binding to developmental control F Spitz, EEM Furlong Nature reviews genetics 13 (9), 613-626, 2012 | 1432 | 2012 |
| Gene expression during the life cycle of Drosophila melanogaster MN Arbeitman, EEM Furlong, F Imam, E Johnson, BH Null, BS Baker, ... Science 297 (5590), 2270-2275, 2002 | 981 | 2002 |
| Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development S Bonn, RP Zinzen, C Girardot, EH Gustafson, A Perez-Gonzalez, ... Nature genetics 44 (2), 148-156, 2012 | 456 | 2012 |
| Ultrasensitive proteome analysis using paramagnetic bead technology CS Hughes, S Foehr, DA Garfield, EE Furlong, LM Steinmetz, J Krijgsveld Molecular systems biology 10 (10), 757, 2014 | 431 | 2014 |
| Combinatorial binding predicts spatio-temporal cis-regulatory activity RP Zinzen, C Girardot, J Gagneur, M Braun, EEM Furlong Nature 462 (7269), 65-70, 2009 | 391 | 2009 |
| Enhancer loops appear stable during development and are associated with paused polymerase Y Ghavi-Helm, FA Klein, T Pakozdi, L Ciglar, D Noordermeer, W Huber, ... Nature 512 (7512), 96-100, 2014 | 381 | 2014 |
| A core transcriptional network for early mesoderm development in Drosophila melanogaster T Sandmann, C Girardot, M Brehme, W Tongprasit, V Stolc, EEM Furlong Genes & development 21 (4), 436-449, 2007 | 319 | 2007 |
| Patterns of gene expression during Drosophila mesoderm development EEM Furlong, EC Andersen, B Null, KP White, MP Scott Science 293 (5535), 1629-1633, 2001 | 311 | 2001 |
| The International Human Epigenome Consortium: a blueprint for scientific collaboration and discovery HG Stunnenberg, S Abrignani, D Adams, M de Almeida, L Altucci, V Amin, ... Cell 167 (5), 1145-1149, 2016 | 271 | 2016 |
| A temporal map of transcription factor activity: mef2 directly regulates target genes at all stages of muscle development T Sandmann, LJ Jensen, JS Jakobsen, MM Karzynski, MP Eichenlaub, ... Developmental cell 10 (6), 797-807, 2006 | 248 | 2006 |
| A transcription factor collective defines cardiac cell fate and reflects lineage history G Junion, M Spivakov, C Girardot, M Braun, EH Gustafson, E Birney, ... Cell 148 (3), 473-486, 2012 | 231 | 2012 |
| Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila K Oktaba, L Gutiérrez, J Gagneur, C Girardot, AK Sengupta, EEM Furlong, ... Developmental cell 15 (6), 877-889, 2008 | 206 | 2008 |
| Developmental enhancers and chromosome topology EEM Furlong, M Levine Science 361 (6409), 1341-1345, 2018 | 176 | 2018 |
| The cis-regulatory dynamics of embryonic development at single-cell resolution DA Cusanovich, JP Reddington, DA Garfield, RM Daza, D Aghamirzaie, ... Nature 555 (7697), 538-542, 2018 | 164 | 2018 |
| Shadow enhancers are pervasive features of developmental regulatory networks E Cannavò, P Khoueiry, DA Garfield, P Geeleher, T Zichner, ... Current Biology 26 (1), 38-51, 2016 | 150 | 2016 |
| Conservation of transcription factor binding specificities across 600 million years of bilateria evolution KR Nitta, A Jolma, Y Yin, E Morgunova, T Kivioja, J Akhtar, K Hens, ... elife 4, e04837, 2015 | 137 | 2015 |
| YY1 and NF1 both activate the human p53 promoter by alternatively binding to a composite element, and YY1 and E1A cooperate to amplify p53 promoter activity. EE Furlong, T Rein, F Martin Molecular and cellular biology 16 (10), 5933-5945, 1996 | 124 | 1996 |
| Model-based method for transcription factor target identification with limited data A Honkela, C Girardot, EH Gustafson, YH Liu, EEM Furlong, ... Proceedings of the National Academy of Sciences 107 (17), 7793-7798, 2010 | 114 | 2010 |
| Developmental control of nuclear size and shape by Kugelkern and Kurzkern A Brandt, F Papagiannouli, N Wagner, M Wilsch-Bräuninger, M Braun, ... Current biology 16 (6), 543-552, 2006 | 107 | 2006 |
| Automated sorting of live transgenic embryos EEM Furlong, D Profitt, MP Scott Nature biotechnology 19 (2), 153-156, 2001 | 107 | 2001 |
