Biologically-informed neural networks guide mechanistic modeling from sparse experimental data JH Lagergren, JT Nardini, RE Baker, MJ Simpson, KB Flores PLoS computational biology 16 (12), e1008462, 2020 | 87 | 2020 |
Learning partial differential equations for biological transport models from noisy spatio-temporal data JH Lagergren, JT Nardini, G Michael Lavigne, EM Rutter, KB Flores Proceedings of the Royal Society A 476 (2234), 20190800, 2020 | 79 | 2020 |
Learning equations from biological data with limited time samples JT Nardini, JH Lagergren, A Hawkins-Daarud, L Curtin, B Morris, ... Bulletin of mathematical biology 82, 1-33, 2020 | 25 | 2020 |
Automated object tracing for biomedical image segmentation using a deep convolutional neural network EM Rutter, JH Lagergren, KB Flores Medical Image Computing and Computer Assisted Intervention–MICCAI 2018: 21st …, 2018 | 14 | 2018 |
Identification of novel, replicable genetic risk loci for suicidal thoughts and behaviors among US military veterans NA Kimbrel, AE Ashley-Koch, XJ Qin, JH Lindquist, ME Garrett, ... JAMA psychiatry 80 (2), 135-145, 2023 | 12 | 2023 |
Forecasting and uncertainty quantification using a hybrid of mechanistic and non-mechanistic models for an age-structured population model J Lagergren, A Reeder, F Hamilton, RC Smith, KB Flores Bulletin of mathematical biology 80, 1578-1595, 2018 | 12 | 2018 |
A convolutional neural network method for boundary optimization enables few-shot learning for biomedical image segmentation EM Rutter, JH Lagergren, KB Flores Domain Adaptation and Representation Transfer and Medical Image Learning …, 2019 | 10 | 2019 |
Climatic clustering and longitudinal analysis with impacts on food, bioenergy, and pandemics J Lagergren, M Cashman, VGM Vergara, PR Eller, JGFM Gazolla, ... Phytobiomes Journal 7 (1), 65-77, 2023 | 9 | 2023 |
A tutorial review of mathematical techniques for quantifying tumor heterogeneity R Everett, K B Flores, N Henscheid, J Lagergren, K Larripa, D Li, ... Mathematical Biosciences and Engineering 17 (4), 2020 | 9 | 2020 |
Region growing with convolutional neural networks for biomedical image segmentation J Lagergren, E Rutter, K Flores arXiv preprint arXiv:2009.11717, 2020 | 4 | 2020 |
LeDaphNet: an automated assessment of Daphnia magna populations using digital imaging and machine learning JH Lagergren, GS Martin, EN Collins, HT Banks, GA LeBlanc, K Flores, ... North Carolina State University. Center for Research in Scientific Computation, 2017 | 2 | 2017 |
Using iterative random forest to find geospatial environmental and Sociodemographic predictors of suicide attempts M Pavicic, AM Walker, KA Sullivan, J Lagergren, A Cliff, J Romero, ... Frontiers in psychiatry 14, 1178633, 2023 | 1 | 2023 |
Few-Shot Learning Enables Population-Scale Analysis of Leaf Traits in Populus trichocarpa J Lagergren, M Pavicic, HB Chhetri, LM York, D Hyatt, D Kainer, ... Plant Phenomics 5, 0072, 2023 | 1 | 2023 |
Few-shot leaf segmentation J Lagergren, M Pavicic, HB Chhetri, LM York, D Hyatt, D Kainer, ... Oak Ridge National Lab.(ORNL), Oak Ridge, TN (United States), 2023 | 1 | 2023 |
Supporting information for" Few-Shot Learning Enables Population-Scale Analysis of Leaf Traits in Populus trichocarpa" J Lagergren, M Pavicic, H Chhetri, L York, D Hyatt, D Kainer, EM Rutter, ... Oak Ridge National Lab.(ORNL), Oak Ridge, TN (United States). Oak Ridge …, 2023 | 1 | 2023 |
Using Explainable-AI to Find Geospatial Environmental and Sociodemographic Predictors of Suicide Attempts M Pavicic, AM Walker, KA Sullivan, J Lagergren, A Cliff, J Romero, ... medRxiv, 2022.04. 26.22274333, 2022 | 1 | 2022 |
Supporting data for climatic clustering and longitudinal analysis with impacts on food, bioenergy, and pandemics J Lagergren, M Cashman, V Melesse Vergara, P Eller, J Gazolla, ... Oak Ridge National Lab.(ORNL), Oak Ridge, TN (United States). Oak Ridge …, 2021 | 1 | 2021 |
A Simple Deconvolutional Mechanism for Point Clouds and Sparse Unordered Data (Student Abstract) T Paniagua, J Lagergren, G Foderaro Proceedings of the AAAI Conference on Artificial Intelligence 34 (10), 13889 …, 2020 | 1 | 2020 |
Data from: Environmental and ecological signals predict periods of nutritional stress for Eastern Australian flying fox populations P Eby, J Lagergren, M Ruiz-Aravena, DJ Becker, W Madden, ... | | 2024 |
Data-Driven Whole-Genome Clustering to Detect Geospatial, Temporal, and Functional Trends in SARS-CoV-2 Evolution J Merlet, J Lagergren, V Melesse Vergara, M Cashman, C Bradburne, ... Proceedings of the Platform for Advanced Scientific Computing Conference, 1-7, 2023 | | 2023 |