Istvan Miklos
Istvan Miklos
Renyi Institute
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Randomization of presence–absence matrices: comments and new algorithms
I Miklós, J Podani
Ecology 85 (1), 86-92, 2004
Dynamics of genome rearrangement in bacterial populations
AE Darling, I Miklós, MA Ragan
PLoS genetics 4 (7), e1000128, 2008
Bayesian coestimation of phylogeny and sequence alignment
G Lunter, I Miklós, A Drummond, JL Jensen, J Hein
Bmc Bioinformatics 6, 1-10, 2005
Epigenetic inheritance, genetic assimilation and speciation
C Pál, I Miklós
Journal of theoretical biology 200 (1), 19-37, 1999
A “long indel” model for evolutionary sequence alignment
I Miklós, GA Lunter, I Holmes
Molecular Biology and Evolution 21 (3), 529-540, 2004
Resemblance coefficients and the horseshoe effect in principal coordinates analysis
J Podani, I Miklós
Ecology 83 (12), 3331-3343, 2002
Streamlining and large ancestral genomes in Archaea inferred with a phylogenetic birth-and-death model
M Csűrös, I Miklós
Molecular biology and evolution 26 (9), 2087-2095, 2009
StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees
Á Novák, I Miklós, R Lyngsř, J Hein
Bioinformatics 24 (20), 2403-2404, 2008
Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs
IM Meyer, I Miklos
Nucleic acids research 33 (19), 6338-6348, 2005
SimulFold: simultaneously inferring RNA structures including pseudoknots, alignments, and trees using a Bayesian MCMC framework
IM Meyer, I Miklós
PLoS computational biology 3 (8), e149, 2007
Co-transcriptional folding is encoded within RNA genes
IM Meyer, I Miklos
BMC molecular biology 5, 1-10, 2004
Degree-based graph construction
H Kim, Z Toroczkai, PL Erdős, I Miklós, LA Székely
Journal of Physics A: Mathematical and Theoretical 42 (39), 392001, 2009
A simple Havel-Hakimi type algorithm to realize graphical degree sequences of directed graphs
PL Erdős, I Miklós, Z Toroczkai
arXiv preprint arXiv:0905.4913, 2009
A probabilistic model for gene content evolution with duplication, loss, and horizontal transfer
M Csűrös, I Miklós
Research in Computational Molecular Biology: 10th Annual International …, 2006
Towards random uniform sampling of bipartite graphs with given degree sequence
PL Erdös, I Miklós, L Soukup
arXiv preprint arXiv:1004.2612, 2010
An efficient algorithm for statistical multiple alignment on arbitrary phylogenetic trees
GA Lunter, I Miklós, YS Song, J Hein
Journal of Computational Biology 10 (6), 869-889, 2003
Statistical alignment: recent progress, new applications, and challenges
R Nielsen, G Lunter, AJ Drummond, I Miklós, J Hein
Statistical methods in molecular evolution, 375-405, 2005
Exact sampling of graphs with prescribed degree correlations
KE Bassler, CI Del Genio, PL Erdős, I Miklós, Z Toroczkai
New Journal of Physics 17 (8), 083052, 2015
A linear memory algorithm for Baum-Welch training
I Miklós, IM Meyer
BMC bioinformatics 6, 1-8, 2005
The mixing time of switch Markov chains: a unified approach
PL Erdős, C Greenhill, TR Mezei, I Miklós, D Soltész, L Soukup
European Journal of Combinatorics 99, 103421, 2022
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