| Block copolymer micellization as a protection strategy for DNA origami NP Agarwal, M Matthies, FN Gür, K Osada, TL Schmidt Angewandte Chemie International Edition 56 (20), 5460-5464, 2017 | 196 | 2017 |
| Design, optimization and analysis of large DNA and RNA nanostructures through interactive visualization, editing and molecular simulation E Poppleton, J Bohlin, M Matthies, S Sharma, F Zhang, P ©ulc Nucleic acids research 48 (12), e72-e72, 2020 | 111 | 2020 |
| Design and synthesis of triangulated DNA origami trusses M Matthies, NP Agarwal, TL Schmidt Nano letters 16 (3), 2108-2113, 2016 | 73 | 2016 |
| TacoxDNA: A user‐friendly web server for simulations of complex DNA structures, from single strands to origami LR Antonio Suma, Erik Poppleton, Michael Matthies, Petr ©ulc, Flavio Romano ... Journal of Computational Chemistry, 2019 | 72 | 2019 |
| Design and simulation of DNA, RNA and hybrid protein–nucleic acid nanostructures with oxView J Bohlin, M Matthies, E Poppleton, J Procyk, A Mallya, H Yan, P ©ulc Nature protocols 17 (8), 1762-1788, 2022 | 47 | 2022 |
| Switchable reconfiguration of a seven-ring interlocked DNA catenane nanostructure CH Lu, A Cecconello, XJ Qi, N Wu, SS Jester, M Famulok, M Matthies, ... Nano Letters 15 (10), 7133-7137, 2015 | 46 | 2015 |
| DNA-encircled lipid bilayers K Iric, M Subramanian, J Oertel, NP Agarwal, M Matthies, X Periole, ... Nanoscale 10 (39), 18463-18467, 2018 | 43 | 2018 |
| Structural Transformation of Wireframe DNA Origami via DNA Polymerase Assisted Gap-Filling NP Agarwal, M Matthies, B Joffroy, TL Schmidt ACS nano 12 (3), 2546-2553, 2018 | 41 | 2018 |
| The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly CR Simmons, T MacCulloch, M Krepl, M Matthies, A Buchberger, ... Nature communications 13 (1), 3112, 2022 | 27 | 2022 |
| Triangulated wireframe structures assembled using single-stranded DNA tiles M Matthies, NP Agarwal, E Poppleton, FM Joshi, P Sulc, TL Schmidt Acs Nano 13 (2), 1839-1848, 2019 | 27 | 2019 |
| The oxDNA coarse-grained model as a tool to simulate DNA origami JPK Doye, H Fowler, D Preąern, J Bohlin, L Rovigatti, F Romano, P ©ulc, ... DNA and RNA Origami: Methods and Protocols, 93-112, 2023 | 21 | 2023 |
| oxDNA: coarse-grained simulations of nucleic acids made simple E Poppleton, M Matthies, D Mandal, F Romano, P ©ulc, L Rovigatti Journal of Open Source Software 8 (81), 4693, 2023 | 16 | 2023 |
| A simple solution to the problem of self-assembling cubic diamond crystals L Rovigatti, J Russo, F Romano, M Matthies, L Kroc, P ©ulc Nanoscale 14 (38), 14268-14275, 2022 | 15 | 2022 |
| A self-regulating DNA rotaxane linear actuator driven by chemical energy Z Yu, M Centola, J Valero, M Matthies, P Sulc, M Famulok Journal of the American Chemical Society 143 (33), 13292-13298, 2021 | 12 | 2021 |
| Hairygami: Analysis of DNA Nanostructures' Conformational Change Driven by Functionalizable Overhangs M Sample, H Liu, M Matthies, P ©ulc arXiv preprint arXiv:2302.09109, 2023 | 5 | 2023 |
| Inverse design of a pyrochlore lattice of DNA origami through model-driven experiments H Liu, M Matthies, J Russo, L Rovigatti, RP Narayanan, T Diep, D McKeen, ... arXiv preprint arXiv:2310.10995, 2023 | 2 | 2023 |
| Single-Molecule Force Spectroscopy of Toehold-Mediated Strand Displacement A Walbrun, T Wang, M Matthies, P ©ulc, FC Simmel, M Rief bioRxiv, 2024.01. 16.575816, 2024 | | 2024 |
| Coarse-Grained Simulations Of Dna And Rna Systems With Oxdna And Oxrna Models: Tutorial ML Sample, M Matthies, P ©ulc 2023 Winter Simulation Conference (WSC), 91-105, 2023 | | 2023 |
| Coarse-grained simulations of DNA and RNA systems with oxDNA and oxRNA models: Introductory tutorial M Matthies, M Sample, P ©ulc arXiv preprint arXiv:2308.01455, 2023 | | 2023 |
| High-speed 3D DNA-PAINT and unsupervised clustering for unlocking 3D DNA origami cryptography GBM Wisna, D Sukhareva, J Zhao, D Satyabola, M Matthies, S Roy, ... bioRxiv, 2023.08. 29.555281, 2023 | | 2023 |
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