Dr. Daniela Börnigen
Dr. Daniela Börnigen
University of Chicago, Harvard University, Katholieke Universiteit Leuven
E-mail megerősítve itt: uchicago.edu - Kezdőlap
Hivatkozott rá
Hivatkozott rá
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
N Segata, D Börnigen, XC Morgan, C Huttenhower
Nature communications 4 (1), 1-11, 2013
Computational meta'omics for microbial community studies
N Segata, D Boernigen, TL Tickle, XC Morgan, WS Garrett, ...
Molecular systems biology 9 (1), 666, 2013
A guide to web tools to prioritize candidate genes
LC Tranchevent, FB Capdevila, D Nitsch, B De Moor, P De Causmaecker, ...
Briefings in Bioinformatics 12 (1), 22-32, 2011
Candidate gene prioritization by network analysis of differential expression using machine learning approaches
D Nitsch, JP Gonçalves, F Ojeda, B De Moor, Y Moreau
BMC bioinformatics 11 (1), 1-16, 2010
An unbiased evaluation of gene prioritization tools
D Börnigen, LC Tranchevent, F Bonachela-Capdevila, K Devriendt, ...
Alterations in oral bacterial communities are associated with risk factors for oral and oropharyngeal cancer
D Börnigen, B Ren, R Pickard, J Li, E Ozer, EM Hartmann, W Xiao, ...
Scientific reports 7 (1), 1-13, 2017
Combined mRNA microarray and proteomic analysis of eutopic endometrium of women with and without endometriosis
A Fassbender, N Verbeeck, D Börnigen, CM Kyama, A Bokor, ...
Human Reproduction 27 (7), 2020-2029, 2012
PINTA: a web server for network-based gene prioritization from expression data
D Nitsch, LC Tranchevent, JP Gonçalves, JK Vogt, SC Madeira, Y Moreau
Nucleic Acids Research 39 (suppl 2), W334-W338, 2011
Network analysis of differential expression for the identification of disease-causing genes
D Nitsch, LC Tranchevent, B Thienpont, L Thorrez, H Van Esch, ...
PloS one 4 (5), e5526, 2009
Functional profiling of the gut microbiome in disease-associated inflammation
D Börnigen, XC Morgan, EA Franzosa, B Ren, RJ Xavier, WS Garrett, ...
Genome medicine 5 (7), 1-13, 2013
Finding the targets of a drug by integration of gene expression data with a protein interaction network
G Laenen, L Thorrez, D Börnigen, Y Moreau
Molecular BioSystems 9 (7), 1676-1685, 2013
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes. Nat Commun 4: 2304
N Segata, D Börnigen, XC Morgan, C Huttenhower
Long noncoding RNA NEAT1 modulates immune cell functions and is suppressed in early onset myocardial infarction patients
M Gast, BH Rauch, A Haghikia, S Nakagawa, J Haas, A Stroux, D Schmidt, ...
Cardiovascular research 115 (13), 1886-1906, 2019
Lynx: a database and knowledge extraction engine for integrative medicine
D Sulakhe, S Balasubramanian, B Xie, B Feng, A Taylor, S Wang, ...
Nucleic acids research 42 (D1), D1007-D1012, 2014
Concordance of gene expression in human protein complexes reveals tissue specificity and pathology
D Börnigen, TH Pers, L Thorrez, C Huttenhower, Y Moreau, S Brunak
Nucleic acids research 41 (18), e171-e171, 2013
High-throughput translational medicine: challenges and solutions
D Sulakhe, S Balasubramanian, B Xie, E Berrocal, B Feng, A Taylor, ...
Systems Analysis of Human Multigene Disorders, 39-67, 2014
Comparison of cox model methods in a low-dimensional setting with few events
FM Ojeda, C Mueller, D Boernigen, DA Tregouet, A Schillert, M Heinig, ...
Genomics, proteomics & bioinformatics 14 (4), 235-243, 2016
Computational reconstruction of NFκB pathway interaction mechanisms during prostate cancer
D Börnigen, S Tyekucheva, X Wang, JR Rider, GS Lee, LA Mucci, ...
PLoS computational biology 12 (4), e1004820, 2016
Disease gene prioritization using network and feature
B Xie, G Agam, S Balasubramanian, J Xu, TC Gilliam, N Maltsev, ...
Journal of Computational Biology 22 (4), 313-323, 2015
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms
M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ...
Molecular systems biology 17 (10), e10387, 2021
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Cikkek 1–20