| The Escherichia coli transcriptome mostly consists of independently regulated modules AV Sastry, Y Gao, R Szubin, Y Hefner, S Xu, D Kim, KS Choudhary, ... Nature communications 10 (1), 5536, 2019 | 173 | 2019 |
| Census of solo LuxR genes in prokaryotic genomes S Hudaiberdiev, KS Choudhary, R Vera Alvarez, Z Gelencsér, B Ligeti, ... Frontiers in cellular and infection microbiology 5, 20, 2015 | 96 | 2015 |
| Metabolic re-wiring of isogenic breast epithelial cell lines following epithelial to mesenchymal transition S Halldorsson, N Rohatgi, M Magnusdottir, KS Choudhary, T Gudjonsson, ... Cancer letters 396, 117-129, 2017 | 58 | 2017 |
| ComQXPA quorum sensing systems may not be unique to Bacillus subtilis: a census in prokaryotic genomes I Dogsa, KS Choudhary, Z Marsetic, S Hudaiberdiev, R Vera, S Pongor, ... PloS one 9 (5), e96122, 2014 | 51 | 2014 |
| EGFR signal-network reconstruction demonstrates metabolic crosstalk in EMT KS Choudhary, N Rohatgi, S Halldorsson, E Briem, T Gudjonsson, ... PLoS computational biology 12 (6), e1004924, 2016 | 50 | 2016 |
| Metabolic and genetic basis for auxotrophies in Gram-negative species Y Seif, KS Choudhary, Y Hefner, A Anand, L Yang, BO Palsson Proceedings of the National Academy of Sciences 117 (11), 6264-6273, 2020 | 47 | 2020 |
| Crowd Sourcing a New Paradigm for Interactome Driven Drug Target Identification in Mycobacterium tuberculosis R Vashisht, AK Mondal, A Jain, A Shah, P Vishnoi, P Priyadarshini, ... Plos one 7 (7), e39808, 2012 | 47 | 2012 |
| The Organization of the Quorum Sensing luxI/R Family Genes in Burkholderia KS Choudhary, S Hudaiberdiev, Z Gelencsér, BG Coutinho, V Venturi, ... International journal of molecular sciences 14 (7), 13727-13747, 2013 | 42 | 2013 |
| Classifying the Topology of AHL-Driven Quorum Sensing Circuits in Proteobacterial Genomes Z Gelencsér, KS Choudhary, BG Coutinho, S Hudaiberdiev, B Galbáts, ... Sensors, 2012 | 42 | 2012 |
| The Staphylococcus aureus Two-Component System AgrAC Displays Four Distinct Genomic Arrangements That Delineate Genomic Virulence Factor Signatures KS Choudhary, N Mih, J Monk, E Kavvas, JT Yurkovich, G Sakoulas, ... Frontiers in Microbiology 9, 1082, 2018 | 33 | 2018 |
| Elucidation of regulatory modes for five two-component systems in Escherichia coli reveals novel relationships KS Choudhary, JA Kleinmanns, K Decker, AV Sastry, Y Gao, R Szubin, ... Msystems 5 (6), 10.1128/msystems. 00980-20, 2020 | 30 | 2020 |
| Pangenome analytics reveal two-component systems as conserved targets in ESKAPEE pathogens A Rajput, Y Seif, KS Choudhary, C Dalldorf, S Poudel, JM Monk, ... Msystems 6 (1), 10.1128/msystems. 00981-20, 2021 | 22 | 2021 |
| Pseudogene repair driven by selection pressure applied in experimental evolution A Anand, CA Olson, L Yang, AV Sastry, E Catoiu, KS Choudhary, ... Nature microbiology 4 (3), 386-389, 2019 | 19 | 2019 |
| Chromosomal Arrangement of AHL-Driven Quorum Sensing Circuits in Pseudomonas Z Gelencsér, B Galbáts, JF Gonzalez, KS Choudhary, S Hudaiberdiev, ... ISRN Microbiology, 2011 | 18 | 2011 |
| LuxR solos from environmental fluorescent pseudomonads C Bez, S Covaceuszach, I Bertani, KS Choudhary, V Venturi Msphere 6 (2), 10.1128/msphere. 01322-20, 2021 | 14 | 2021 |
| The Bitome: digitized genomic features reveal fundamental genome organization CR Lamoureux, KS Choudhary, ZA King, TE Sandberg, Y Gao, AV Sastry, ... Nucleic Acids Research 48 (18), 10157-10163, 2020 | 13 | 2020 |
| Pangenome analytics reveal two-component systems as conserved targets in ESKAPEE pathogens. mSystems 6: e00981-20 A Rajput, Y Seif, KS Choudhary, C Dalldorf, S Poudel, JM Monk, ... | 9 | 2021 |
| MetENP/MetENPWeb: An R package and web application for metabolomics enrichment and pathway analysis in metabolomics workbench KS Choudhary, E Fahy, K Coakley, M Sud, MR Maurya, S Subramaniam BioRxiv, 2020.11. 20.391912, 2020 | 4 | 2020 |
| A universal day zero infectious disease testing strategy leveraging CRISPR-based sample depletion and metagenomic sequencing AP Chan, A Siddique, Y Desplat, Y Choi, S Ranganathan, KS Choudhary, ... Medrxiv, 2022.05. 12.22274799, 2022 | 3 | 2022 |
| DEGenR: An R Shiny app for differential gene expression and enrichment analysis KS Choudhary, AB Caldwell, S Subramaniam zenodo, 2021 | 3 | 2021 |
Sanjarbek HudaiberdievNCBI, National Institutes of HealthVerified email at nih.gov
