Enrichr: a comprehensive gene set enrichment analysis web server 2016 update MV Kuleshov, MR Jones, AD Rouillard, NF Fernandez, Q Duan, Z Wang, ... Nucleic acids research 44 (W1), W90-W97, 2016 | 7892 | 2016 |
Gene set knowledge discovery with Enrichr Z Xie, A Bailey, MV Kuleshov, DJB Clarke, JE Evangelista, SL Jenkins, ... Current protocols 1 (3), e90, 2021 | 1710 | 2021 |
Formation of regulatory patterns during signal propagation in a mammalian cellular network A Ma'ayan, SL Jenkins, S Neves, A Hasseldine, E Grace, B Dubin-Thaler, ... Science 309 (5737), 1078, 2005 | 393 | 2005 |
The library of integrated network-based cellular signatures NIH program: system-level cataloging of human cells response to perturbations AB Keenan, SL Jenkins, KM Jagodnik, S Koplev, E He, D Torre, Z Wang, ... Cell systems 6 (1), 13-24, 2018 | 392 | 2018 |
Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd Z Wang, CD Monteiro, KM Jagodnik, NF Fernandez, GW Gundersen, ... Nature communications 7 (1), 12846, 2016 | 253 | 2016 |
Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data A Koleti, R Terryn, V Stathias, C Chung, DJ Cooper, JP Turner, D Vidoviĉ, ... Nucleic acids research 46 (D1), D558-D566, 2018 | 168 | 2018 |
Network analysis of FDA approved drugs and their targets A Ma'ayan, SL Jenkins, J Goldfarb, R Iyengar Mount Sinai Journal of Medicine: A Journal of Translational and Personalized …, 2007 | 136 | 2007 |
Appyters: Turning Jupyter Notebooks into data-driven web apps DJB Clarke, M Jeon, DJ Stein, N Moiseyev, E Kropiwnicki, C Dai, Z Xie, ... Patterns 2 (3), 2021 | 76 | 2021 |
Systems approach to explore components and interactions in the presynapse NS Abul‐Husn, I Bushlin, JA Morón, SL Jenkins, G Dolios, R Wang, ... Proteomics 9 (12), 3303-3315, 2009 | 65 | 2009 |
Systems Biology--Biomedical Modeling EA Sobie, YS Lee, SL Jenkins, R Iyengar Science Signaling 4 (190), tr2, 2011 | 58 | 2011 |
FAIRshake: toolkit to evaluate the FAIRness of research digital resources DJB Clarke, L Wang, A Jones, ML Wojciechowicz, D Torre, KM Jagodnik, ... Cell systems 9 (5), 417-421, 2019 | 50 | 2019 |
Neuro2A Differentiation by Gαi/o Pathway A Ma'ayan, SL Jenkins, A Barash, R Iyengar Science signaling 2 (54), cm1-cm1, 2009 | 46 | 2009 |
Connectivity mapping: methods and applications AB Keenan, ML Wojciechowicz, Z Wang, KM Jagodnik, SL Jenkins, ... Annual Review of Biomedical Data Science 2, 69-92, 2019 | 45 | 2019 |
SNAVI: Desktop application for analysis and visualization of large-scale signaling networks A Ma'ayan, SL Jenkins, RL Webb, SI Berger, SP Purushothaman, ... BMC Systems Biology 3 (1), 10, 2009 | 41 | 2009 |
Systems pharmacology meets predictive, preventive, personalized and participatory medicine SL Jenkins, A Ma ‘ayan Pharmacogenomics 14 (2), 119-122, 2013 | 37 | 2013 |
Genes2WordCloud: a quick way to identify biological themes from gene lists and free text C Baroukh, SL Jenkins, R Dannenfelser, A Ma'Ayan Source code for biology and medicine 6, 1-5, 2011 | 35 | 2011 |
SigCom LINCS: data and metadata search engine for a million gene expression signatures JE Evangelista, DJB Clarke, Z Xie, A Lachmann, M Jeon, K Chen, ... Nucleic acids research 50 (W1), W697-W709, 2022 | 31 | 2022 |
Inquiry learning. Integrating content detail and critical reasoning by peer review R Iyengar, MA Diverse-Pierluissi, SL Jenkins, AM Chan, LA Devi, ... Science 319 (5867), 1189, 2008 | 29 | 2008 |
Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop KM Jagodnik, S Koplev, SL Jenkins, L Ohno-Machado, B Paten, ... Journal of biomedical informatics 71, 49-57, 2017 | 28 | 2017 |
FAIRshake: toolkit to evaluate the findability, accessibility, interoperability, and reusability of research digital resources DJB Clarke, L Wang, A Jones, ML Wojciechowicz, D Torre, KM Jagodnik, ... BioRxiv, 657676, 2019 | 14 | 2019 |