Matthew MacManes

Hivatkozott rá

	Összes	2020 óta
Hivatkozások	11166	6160
h-index	25	21
i10-index	44	38

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Társszerzők

Manfred GrabherrAssociate Professor, Inland Norway University of Applied SciencesE-mail megerősítve itt: inn.no
Alexie PapanicolaouAssociate Professor, Hawkesbury Institute for the Environment, Western SydneyE-mail megerősítve itt: westernsydney.edu.au
Joshua OrvisInstitute for Genome Sciences & Johns HopkinsE-mail megerősítve itt: som.umaryland.edu
Nir FriedmanProfessor of Computer Science and Medicine, Hebrew UniversityE-mail megerősítve itt: mail.huji.ac.il
Richard LeDucBioinformatics Platform Director, Children's Hospital Research Institute of ManitobaE-mail megerősítve itt: chrim.ca
Brian HaasBroad InstituteE-mail megerősítve itt: broadinstitute.org
Colin DeweyProfessor of Biostatistics and Medical Informatics, University of Wisconsin-MadisonE-mail megerősítve itt: biostat.wisc.edu
Francesco StrozziiTeos TherapeuticsE-mail megerősítve itt: iteostherapeutics.com
Matthew Brian CougerBrigham and Women's Hospital / Harvard Medical SchoolE-mail megerősítve itt: bwh.harvard.edu
Joshua C BowdenCSIROE-mail megerősítve itt: csiro.au
Robert HenschelIndiana University, Technische Universität Dresden, Technical University Dresden, Dresden University of TechnologyE-mail megerősítve itt: iu.edu
Rebecca M. CalisiAssociate Professor of Neurobiology, Physiology and Behavior, University of California, DavisE-mail megerősítve itt: ucdavis.edu
Moran YassourThe Hebrew University of JerusalemE-mail megerősítve itt: mail.huji.ac.il
Bo LiPrincipal Scientist, Biology Research | AI Development, gRED Computational Sciences, GenentechE-mail megerősítve itt: gene.com
David Andrew EcclesBioinformatics Research Analyst, Gringene BioinformaticsE-mail megerősítve itt: gringene.org
Suzanne H. AustinOregon State UniversityE-mail megerősítve itt: oregonstate.edu
Kyle SummersEast Carolina UniversityE-mail megerősítve itt: ecu.edu
Tyler LinderothMichigan State University, W.K. Kellogg Biological StationE-mail megerősítve itt: msu.edu
Victoria FarrarNSF postdoctoral fellow, University of IllinoisE-mail megerősítve itt: illinois.edu
Anna Tigano, Ph.D.Bioinformatics Biologist, Department of Fisheries and OceansE-mail megerősítve itt: dfo-mpo.gc.ca

Követés

Matthew MacManes

University of New Hampshire

E-mail megerősítve itt: unh.edu - Kezdőlap

Evolutionary Physiology and Genomics


Cím Rendezés hivatkozások szerint Rendezés év szerint Rendezés cím szerint	Hivatkozott rá Hivatkozott rá	Év
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ... Nature protocols 8 (8), 1494-1512, 2013	8294	2013
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013	818	2013
On the optimal trimming of high-throughput mRNA sequence data MD MacManes Frontiers in genetics 5, 13, 2014	240	2014
Comparative genomics explains the evolutionary success of reef-forming corals D Bhattacharya, S Agrawal, M Aranda, S Baumgarten, M Belcaid, ... eLife, 2016	194	2016
Museum genomics: low‐cost and high‐accuracy genetic data from historical specimens KC Rowe, S Singhal, MD Macmanes, JF Ayroles, TL Morelli, EM Rubidge, ... Molecular Ecology Resources 11 (6), 1082-1092, 2011	161	2011
Dynamic pigmentary and structural coloration within cephalopod chromatophore organs TL Williams, SL Senft, J Yeo, FJ Martín-Martínez, AM Kuzirian, CA Martin, ... Nature communications 10 (1), 1004, 2019	151	2019
The Oyster River Protocol: a multi-assembler and kmer approach for de novo transcriptome assembly MD MacManes PeerJ 6, e5428, 2018	118	2018
Genomic takeover by transposable elements in the strawberry poison frog RL Rogers, L Zhou, C Chu, R Márquez, A Corl, T Linderoth, L Freeborn, ... Molecular Biology and Evolution 35 (12), 2913-2927, 2018	72	2018
A total crapshoot? Evaluating bioinformatic decisions in animal diet metabarcoding analyses DR O'Rourke, NA Bokulich, MA Jusino, MD MacManes, JT Foster Ecology and Evolution 10 (18), 9721-9739, 2020	68	2020
Widespread patterns of sexually dimorphic gene expression in an avian hypothalamic–pituitary–gonadal (HPG) axis MD MacManes, SH Austin, AS Lang, A Booth, V Farrar, RM Calisi Scientific reports 7 (1), 45125, 2017	55	2017
Improving transcriptome assembly through error correction of high-throughput sequence reads MD MacManes, MB Eisen PeerJ 1, e113, 2013	53	2013
PALADIN: protein alignment for functional profiling whole metagenome shotgun data A Westbrook, J Ramsdell, T Schuelke, L Normington, RD Bergeron, ... Bioinformatics 33 (10), 1473-1478, 2017	51	2017
Comparative and population genomics approaches reveal the basis of adaptation to deserts in a small rodent A Tigano, JP Colella, MD MacManes Molecular ecology 29 (7), 1300-1314, 2020	47	2020
Variation in pigmentation gene expression is associated with distinct aposematic color morphs in the poison frog Dendrobates auratus AMM Stuckert, E Moore, KP Coyle, I Davison, MD MacManes, R Roberts, ... BMC Evolutionary Biology 19, 1-15, 2019	47	2019
Severe acute dehydration in a desert rodent elicits a transcriptional response that effectively prevents kidney injury MD MacManes American Journal of Physiology-Renal Physiology 313 (2), F262-F272, 2017	47	2017
Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse Peromyscus eremicus MD MacManes, MB Eisen PeerJ 2, e642, 2014	43	2014
Establishing evidenced-based best practice for the de novo assembly and evaluation of transcriptomes from non-model organisms MD MacManes BioRxiv, 035642, 2015	38*	2015
Isolation and characterization of polymorphic microsatellite loci from Octodon degus YF Quan, MD Macmanes, LA Ebensperger, EA Lacey, LD Hayes Molecular Ecology Resources 9 (3), 999-1001, 2009	35	2009
Brain transcriptional profiles of male alternative reproductive tactics and females in bluegill sunfish CG Partridge, MD MacManes, R Knapp, BD Neff PLoS One 11 (12), e0167509, 2016	34	2016
RETRACTED: The genomics of mimicry: Gene expression throughout development provides insights into convergent and divergent phenotypes in a Müllerian mimicry system AMM Stuckert, M Chouteau, M McClure, TM LaPolice, T Linderoth, ... Molecular Ecology 30 (16), 4039-4061, 2021	33	2021

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