Roberto Vera Alvarez, PhD
Roberto Vera Alvarez, PhD
National Center for Biotechnology Information
Verified email at ncbi.nlm.nih.gov - Homepage
Title
Cited by
Cited by
Year
BioContainers: An open-source and community-driven framework for software standardization
Bioinformatics, 10.1093/bioinformatics/btx192, 2017
105*2017
Census of solo LuxR genes in prokaryotic genomes
S Hudaiberdiev, KS Choudhary, R Vera Alvarez, Z Gelencsér, B Ligeti, ...
Frontiers in cellular and infection microbiology 5, 20, 2015
482015
ComQXPA quorum sensing systems may not be unique to Bacillus subtilis: a census in prokaryotic genomes
I Dogsa, KS Choudhary, Z Marsetic, S Hudaiberdiev, R Vera, S Pongor, ...
PloS one 9 (5), 2014
362014
In silico analysis of accurate proteomics, complemented by selective isolation of peptides
Y Perez-Riverol, A Sánchez, Y Ramos, A Schmidt, M Müller, L Betancourt, ...
Journal of proteomics 74 (10), 2071-2082, 2011
322011
Chemical compounds having antiviral activity against dengue virus and other flaviviruses
YM Reyes, GC Santiago, OG Cruz, RV Alvarez, VH Galindo, NF Salazar, ...
US Patent 8,722,742, 2014
182014
Chemical Compounds Having Antiviral Activity against Dengue Virus and Other Flaviviruses
Y MAZOLA REYES, G CHINEA SANTIAGO, O GUIROLA CRUZ, ...
WO Patent 2,009,106,019, 2009
18*2009
JBioWH: an open-source Java framework for bioinformatics data integration
R Vera, Y Perez-Riverol, S Perez, B Ligeti, A Kertesz-Farkas, S Pongor
Database 2013, 2013
152013
TPMCalculator: one-step software to quantify mRNA abundance of genomic features
R Vera Alvarez, LS Pongor, L Marińo-Ramírez, D Landsman
Bioinformatics 35 (11), 1960-1962, 2019
142019
TPMCalculator: one-step software to quantify mRNA abundance of genomic features
R Vera Alvarez, LS Pongor, L Marińo-Ramírez, D Landsman
Bioinformatics 35 (11), 1960-1962, 2019
142019
Quantifying deleterious effects of regulatory variants
S Li, R Vera Alvarez, R Sharan, D Landsman, I Ovcharenko
Nucleic Acids Research, 1-8, 2016
142016
A Parallel Systematic-Monte Carlo Algorithm for Exploring Conformational Space
Y Perez-Riverol, R Vera, Y Mazola, A Musacchio
Current topics in medicinal chemistry 12 (16), 1790-1796, 2012
112012
Evaluation of Phenylthiocarbamoyl-Derivatized Peptides by Electrospray Ionization Mass Spectrometry: Selective Isolation and Analysis of Modified Multiply Charged Peptides for …
A Sanchez, Y Perez-Riverol, LJ González, J Noda, L Betancourt, ...
Analytical chemistry 82 (20), 8492-8501, 2010
112010
A network-based target overlap score for characterizing drug combinations: high correlation with cancer clinical trial results
B Ligeti, Z Pénzváltó, R Vera, B Győrffy, S Pongor
PloS one 10 (6), 2015
102015
Fast and Sensitive Alignment of Microbial Whole Genome Sequencing Reads to Large Sequence Datasets on a Desktop PC: Application to Metagenomic Datasets and Pathogen Identification
LS Pongor, R Vera, B Ligeti
PLOS One 9 (7), e103441, 2014
102014
Fast and sensitive alignment of microbial whole genome sequencing reads to large sequence datasets on a desktop PC: application to metagenomic datasets and pathogen identification
LS Pongor, R Vera, B Ligeti
PloS one 9 (7), 2014
102014
PTMTreeSearch: a novel two-stage tree-search algorithm with pruning rules for the identification of post-translational modification of proteins in MS/MS spectra
A Kertész-Farkas, B Reiz, R Vera, MP Myers, S Pongor
Bioinformatics 30 (2), 234-241, 2014
92014
Predicting effective drug combinations via network propagation
B Ligeti, R Vera, G Lukács, B Győrffy, S Pongor
2013 IEEE Biomedical Circuits and Systems Conference (BioCAS), 378-381, 2013
62013
Predicting effective drug combinations via network propagation
B Ligeti, R Vera, G Lukács, B Győrffy, S Pongor
2013 IEEE Biomedical Circuits and Systems Conference (BioCAS), 378-381, 2013
62013
Banana (Musa acuminata) transcriptome profiling in response to rhizobacteria: Bacillus amyloliquefaciens Bs006 and Pseudomonas fluorescens Ps006
RM Gamez, F Rodríguez, NM Vidal, S Ramirez, RV Alvarez, D Landsman, ...
BMC genomics 20 (1), 378, 2019
52019
Census of solo LuxR genes in prokaryotic genomes. Front Cell Infect Microbiol 5: 20
S Hudaiberdiev, KS Choudhary, R Vera Alvarez, Z Gelencsér, B Ligeti, ...
52015
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