Collective ERK/Akt activity waves orchestrate epithelial homeostasis by driving apoptosis-induced survival PA Gagliardi, M Dobrzyński, MA Jacques, C Dessauges, P Ender, Y Blum, ... Developmental cell 56 (12), 1712-1726. e6, 2021 | 103 | 2021 |
Temporal perturbation of ERK dynamics reveals network architecture of FGF2/MAPK signaling Y Blum, J Mikelson, M Dobrzyński, H Ryu, MA Jacques, NL Jeon, ... Molecular systems biology 15 (11), e8947, 2019 | 38 | 2019 |
Spatiotemporal control of ERK pulse frequency coordinates fate decisions during mammary acinar morphogenesis P Ender, PA Gagliardi, M Dobrzyński, A Frismantiene, C Dessauges, ... Developmental cell 57 (18), 2153-2167. e6, 2022 | 30 | 2022 |
Optogenetic actuator–ERK biosensor circuits identify MAPK network nodes that shape ERK dynamics C Dessauges, J Mikelson, M Dobrzyński, MA Jacques, A Frismantiene, ... Molecular systems biology 18 (6), e10670, 2022 | 27 | 2022 |
CODEX, a neural network approach to explore signaling dynamics landscapes MA Jacques, M Dobrzyński, PA Gagliardi, R Sznitman, O Pertz Molecular systems biology 17 (4), e10026, 2021 | 19 | 2021 |
Mining single-cell time-series datasets with Time Course Inspector M Dobrzyński, MA Jacques, O Pertz Bioinformatics 36 (6), 1968-1969, 2020 | 14 | 2020 |
Systems‐level transcriptional regulation of Caenorhabditis elegans metabolism S Nanda, MA Jacques, W Wang, CL Myers, LS Yilmaz, AJM Walhout Molecular Systems Biology 19 (5), e11443, 2023 | 10 | 2023 |
Automatic detection of spatio-temporal signaling patterns in cell collectives PA Gagliardi, B Grädel, MA Jacques, L Hinderling, P Ender, AR Cohen, ... Journal of Cell Biology 222 (10), e202207048, 2023 | 9 | 2023 |
Optogenetic actuator/biosensor circuits for large-scale interrogation of ERK dynamics identify sources of MAPK signaling robustness C Dessauges, J Mikelson, M Dobrzyński, MA Jacques, A Frismantiene, ... BioRxiv, 2021 | 6 | 2021 |
Mining of Single-Cell Signaling Time-Series for Dynamic Phenotypes with Clustering M Dobrzyński, MA Jacques, O Pertz TGF-Beta Signaling: Methods and Protocols, 183-206, 2022 | | 2022 |
Collective ERK/Akt Activity Waves Orchestrate Epithelial Homeostasis by Driving Apoptosis-Induced Survival RM Hughes, PA Gagliardi, M Dobrzyński, MA Jacques, C Dessauges, ... | | 2021 |
CODEX: a Neural Network Approach to reveal Signaling Dynamics Landscapes MA Jacques, M Dobrzynski, O Pertz, PA Gagliardi, R Sznitman Cell Bio Virtual 2020, 2020 | | 2020 |
Interactive Time-series Outlier Detection M Dobrzyński, MA Jacques | | 2019 |
A high throughput optogenetic system to interrogate MAPK signaling network dynamics at the single cell level C Dessauges, M Dobrzynski, Y Blum, MA Jacques, M Khammash, O Pertz | | |