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Orcun Goksel
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Cloud-based evaluation of anatomical structure segmentation and landmark detection algorithms: VISCERAL anatomy benchmarks
O Jimenez-del-Toro, H Müller, M Krenn, K Gruenberg, AA Taha, ...
IEEE transactions on medical imaging 35 (11), 2459-2475, 2016
1892016
Isotropic total variation regularization of displacements in parametric image registration
V Vishnevskiy, T Gass, G Szekely, C Tanner, O Goksel
IEEE transactions on medical imaging 36 (2), 385-395, 2016
1882016
Quantitative spatial analysis of haematopoiesis-regulating stromal cells in the bone marrow microenvironment by 3D microscopy
A Gomariz, PM Helbling, S Isringhausen, U Suessbier, A Becker, A Boss, ...
Nature communications 9 (1), 2532, 2018
1282018
Modeling and simulation of flexible needles
O Goksel, E Dehghan, SE Salcudean
Medical engineering & physics 31 (9), 1069-1078, 2009
942009
Spatial domain reconstruction for imaging speed-of-sound with pulse-echo ultrasound: simulation and in vivo study
SJ Sanabria, E Ozkan, M Rominger, O Goksel
Physics in Medicine & Biology 63 (21), 215015, 2018
852018
Statismo-A framework for PCA based statistical models
M Lüthi, R Blanc, T Albrecht, T Gass, O Goksel, P Büchler, M Kistler, ...
The Insight Journal 2012, 1-18, 2012
842012
Generative adversarial networks for MR-CT deformable image registration
C Tanner, F Ozdemir, R Profanter, V Vishnevsky, E Konukoglu, O Goksel
arXiv preprint arXiv:1807.07349, 2018
802018
Hierarchical graph representations in digital pathology
P Pati, G Jaume, A Foncubierta-Rodriguez, F Feroce, AM Anniciello, ...
Medical image analysis 75, 102264, 2022
792022
Quantifying explainers of graph neural networks in computational pathology
G Jaume, P Pati, B Bozorgtabar, A Foncubierta, AM Anniciello, F Feroce, ...
Proceedings of the IEEE/CVF conference on computer vision and pattern …, 2021
712021
B-Mode Ultrasound Image Simulation in Deformable 3-D Medium
O Goksel, SE Salcudean
Medical Imaging, IEEE Transactions on 28 (11), 1657-1669, 2009
692009
3D simulation of needle-tissue interaction with application to prostate brachytherapy
O Goksel, SE Salcudean, SP DiMaio
Computer Aided Surgery 11 (6), 279-288, 2006
652006
3D needle-tissue interaction simulation for prostate brachytherapy
O Goksel, SE Salcudean, SP DiMaio, R Rohling, J Morris
Medical Image Computing and Computer-Assisted Intervention–MICCAI 2005: 8th …, 2005
642005
Hact-net: A hierarchical cell-to-tissue graph neural network for histopathological image classification
P Pati, G Jaume, LA Fernandes, A Foncubierta-Rodríguez, F Feroce, ...
Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and …, 2020
632020
Inverse problem of ultrasound beamforming with sparsity constraints and regularization
E Ozkan, V Vishnevsky, O Goksel
IEEE transactions on ultrasonics, ferroelectrics, and frequency control 65 …, 2017
622017
Evaluation of 2D and 3D ultrasound tracking algorithms and impact on ultrasound‐guided liver radiotherapy margins
V De Luca, J Banerjee, A Hallack, S Kondo, M Makhinya, D Nouri, ...
Medical physics 45 (11), 4986-5003, 2018
602018
Sub-sample displacement estimation from digitized ultrasound RF signals using multi-dimensional polynomial fitting of the cross-correlation function
RZ Azar, O Goksel, SE Salcudean
IEEE transactions on ultrasonics, ferroelectrics, and frequency control 57 …, 2010
582010
Haptic simulator for prostate brachytherapy with simulated needle and probe interaction
O Goksel, K Sapchuk, SE Salcudean
IEEE transactions on haptics 4 (3), 188-198, 2011
572011
Learn the new, keep the old: Extending pretrained models with new anatomy and images
F Ozdemir, P Fuernstahl, O Goksel
Medical Image Computing and Computer Assisted Intervention–MICCAI 2018: 21st …, 2018
482018
Weighted mean curvature
Y Gong, O Goksel
Signal Processing 164, 329-339, 2019
452019
Siamese networks with location prior for landmark tracking in liver ultrasound sequences
A Gomariz, W Li, E Ozkan, C Tanner, O Goksel
2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019 …, 2019
432019
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