| SVMTriP: a method to predict antigenic epitopes using support vector machine to integrate tri-peptide similarity and propensity B Yao, L Zhang, S Liang, C Zhang Public Library of Science 7 (9), e45152, 2012 | 350 | 2012 |
| Protein binding site prediction using an empirical scoring function S Liang, C Zhang, S Liu, Y Zhou Nucleic acids research 34 (13), 3698-3707, 2006 | 307 | 2006 |
| EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results S Liang, D Zheng, DM Standley, B Yao, M Zacharias, C Zhang BMC bioinformatics 11, 1-6, 2010 | 186 | 2010 |
| Side‐chain modeling with an optimized scoring function S Liang, NV Grishin Protein Science 11 (2), 322-331, 2002 | 166 | 2002 |
| Conformational B-cell epitope prediction on antigen protein structures: a review of current algorithms and comparison with common binding site prediction methods B Yao, D Zheng, S Liang, C Zhang PloS one 8 (4), e62249, 2013 | 136 | 2013 |
| Prediction of antigenic epitopes on protein surfaces by consensus scoring S Liang, D Zheng, C Zhang, M Zacharias BMC bioinformatics 10, 1-10, 2009 | 121 | 2009 |
| Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ... Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013 | 111 | 2013 |
| Fold recognition by concurrent use of solvent accessibility and residue depth S Liu, C Zhang, S Liang, Y Zhou Proteins: Structure, Function, and Bioinformatics 68 (3), 636-645, 2007 | 105 | 2007 |
| A simple reference state makes a significant improvement in near‐native selections from structurally refined docking decoys S Liang, S Liu, C Zhang, Y Zhou Proteins: Structure, Function, and Bioinformatics 69 (2), 244-253, 2007 | 66 | 2007 |
| Kotai Antibody Builder: automated high-resolution structural modeling of antibodies K Yamashita, K Ikeda, K Amada, S Liang, Y Tsuchiya, H Nakamura, ... Bioinformatics 30 (22), 3279-3280, 2014 | 63 | 2014 |
| Fast and accurate prediction of protein side-chain conformations S Liang, D Zheng, C Zhang, DM Standley Bioinformatics 27 (20), 2913-2914, 2011 | 62 | 2011 |
| Exploring the molecular design of protein interaction sites with molecular dynamics simulations and free energy calculations S Liang, L Li, WL Hsu, MN Pilcher, V Uversky, Y Zhou, AK Dunker, ... Biochemistry 48 (2), 399-414, 2009 | 62 | 2009 |
| High‐resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations H Shirai, K Ikeda, K Yamashita, Y Tsuchiya, J Sarmiento, S Liang, ... Proteins: Structure, Function, and Bioinformatics 82 (8), 1624-1635, 2014 | 56 | 2014 |
| Effective scoring function for protein sequence design S Liang, NV Grishin Proteins: Structure, Function, and Bioinformatics 54 (2), 271-281, 2004 | 56 | 2004 |
| Consensus scoring for enriching near‐native structures from protein–protein docking decoys S Liang, SO Meroueh, G Wang, C Qiu, Y Zhou Proteins: Structure, Function, and Bioinformatics 75 (2), 397-403, 2009 | 50 | 2009 |
| LEAP: Highly accurate prediction of protein loop conformations by integrating coarse‐grained sampling and optimized energy scores with all‐atom refinement of backbone and side … S Liang, C Zhang, Y Zhou Journal of computational chemistry 35 (4), 335-341, 2014 | 41 | 2014 |
| Protein side chain modeling with orientation‐dependent atomic force fields derived by series expansions S Liang, Y Zhou, N Grishin, DM Standley Journal of computational chemistry 32 (8), 1680-1686, 2011 | 41 | 2011 |
| SVMTriP: a method to predict B-cell linear antigenic epitopes B Yao, D Zheng, S Liang, C Zhang Immunoinformatics, 299-307, 2020 | 30 | 2020 |
| Beyond the rotamer library: Genetic algorithm combined with the disturbing mutation process for upbuilding protein side‐chains Z Liu, L Jiang, Y Gao, S Liang, H Chen, Y Han, L Lai Proteins: Structure, Function, and Bioinformatics 50 (1), 49-62, 2003 | 24 | 2003 |
| A novel function prediction approach using protein overlap networks S Liang, D Zheng, DM Standley, H Guo, C Zhang BMC systems biology 7, 1-10, 2013 | 23 | 2013 |
