| Optimising droplet digital PCR analysis approaches for detection and quantification of bacteria: a case study of fire blight and potato brown rot T Dreo, M Pirc, ® Ramąak, J Pavąič, M Milavec, J ®el, K Gruden Analytical and bioanalytical chemistry 406, 6513-6528, 2014 | 164 | 2014 |
| Assessment of toxicity and genotoxicity of low doses of 5-fluorouracil in zebrafish (Danio rerio) two-generation study R Kovacs, Z Csenki, K Bakos, B Urbanyi, Á Horváth, V Garaj-Vrhovac, ... Water research 77, 201-212, 2015 | 108 | 2015 |
| GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology ® Ramąak, © Baebler, A Rotter, M Korbar, I Mozetič, B Usadel, K Gruden Nucleic Acids Research 42 (D1), D1167-D1175, 2014 | 106 | 2014 |
| Enabling reusability of plant phenomic datasets with MIAPPE 1.1 EA Papoutsoglou, D Faria, D Arend, E Arnaud, IN Athanasiadis, I Chaves, ... New Phytologist 227 (1), 260-273, 2020 | 105 | 2020 |
| Heterogeneous glioblastoma cell cross-talk promotes phenotype alterations and enhanced drug resistance H Motaln, A Koren, K Gruden, ® Ramąak, C Schichor, TT Lah Oncotarget 6 (38), 40998, 2015 | 69 | 2015 |
| System level analysis of cacao seed ripening reveals a sequential interplay of primary and secondary metabolism leading to polyphenol accumulation and preparation of stress … L Wang, T Nägele, H Doerfler, L Fragner, P Chaturvedi, E Nukarinen, ... The Plant Journal 87 (3), 318-332, 2016 | 64 | 2016 |
| Physiological and proteomic signatures reveal mechanisms of superior drought resilience in pearl millet compared to wheat A Ghatak, P Chaturvedi, G Bachmann, L Valledor, ® Ramąak, ... Frontiers in Plant Science 11, 600278, 2021 | 56 | 2021 |
| Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction T Stare, ® Ramąak, A Blejec, K Stare, N Turnąek, W Weckwerth, ... BMC genomics 16, 1-17, 2015 | 54 | 2015 |
| Salicylic acid perturbs sRNA-gibberellin regulatory network in immune response of potato to potato virus Y infection M Kriľnik, M Petek, D Dobnik, ® Ramąak, © Baebler, S Pollmann, ... Frontiers in Plant Science 8, 320692, 2017 | 43 | 2017 |
| Salicylic acid perturbs sRNA-gibberellin regulatory network in immune response of potato to potato virus Y infection M Kriľnik, M Petek, D Dobnik, ® Ramąak, © Baebler, S Pollmann, ... Frontiers in Plant Science 8, 320692, 2017 | 43 | 2017 |
| PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases T Liu, P Salguero, M Petek, C Martinez-Mira, L Balzano-Nogueira, ... Nucleic Acids Research 50 (W1), W551-W559, 2022 | 35 | 2022 |
| Network modeling unravels mechanisms of crosstalk between ethylene and salicylate signaling in potato ® Ram¡ ak, A Coll, T Stare, O Tzfadia, © Baebler, Y Van de Peer, ... Plant physiology 178 (1), 488-499, 2018 | 35 | 2018 |
| Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato M Petek, M Zagorąčak, ® Ramąak, S Sanders, © Tomaľ, E Tseng, ... Scientific data 7 (1), 249, 2020 | 30 | 2020 |
| Direct regulation of shikimate, early phenylpropanoid, and stilbenoid pathways by Subgroup 2 R2R3‐MYBs in grapevine L Orduña, M Li, D Navarro‐Payá, C Zhang, A Santiago, P Romero, ... The Plant Journal 110 (2), 529-547, 2022 | 23 | 2022 |
| Multiomics analysis of tolerant interaction of potato with potato virus Y T Stare, ® Ramąak, M Kriľnik, K Gruden Scientific data 6 (1), 250, 2019 | 15 | 2019 |
| Differential Response of Grapevine to Infection with ‘Candidatus Phytoplasma solani’ in Early and Late Growing Season through Complex Regulation of mRNA … M Dermastia, B ©krlj, R Strah, B Anľič, © Tomaľ, M Kriľnik, C Schönhuber, ... International journal of molecular sciences 22 (7), 3531, 2021 | 14 | 2021 |
| Prunus persica plant endogenous peptides PpPep1 and PpPep2 cause PTI-like transcriptome reprogramming in peach and enhance resistance to Xanthomonas arboricola pv. pruni L Foix, A Nadal, M Zagorąčak, ® Ramąak, A Esteve-Codina, K Gruden, ... BMC genomics 22 (1), 360, 2021 | 11 | 2021 |
| Interactive exploration of heterogeneous biological networks with Biomine Explorer V Podpečan, ® Ramąak, K Gruden, H Toivonen, N Lavrač Bioinformatics 35 (24), 5385-5388, 2019 | 10 | 2019 |
| Major orchestration of shikimate, early phenylpropanoid and stilbenoid pathways by Subgroup 2 R2R3-MYBs in grapevine L Orduña, M Li, D Navarro-Payá, C Zhang, A Santiago, P Romero, ... bioRxiv, 2020.12. 31.424746, 2021 | 7* | 2021 |
| DiNAR: revealing hidden patterns of plant signalling dynamics using Differential Network Analysis in R M Zagorąčak, A Blejec, ® Ramąak, M Petek, T Stare, K Gruden Plant methods 14, 1-9, 2018 | 7 | 2018 |
