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Mikaela Cashman
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Year
Test case prioritization of build acceptance tests for an enterprise cloud application: An industrial case study
H Srikanth, M Cashman, MB Cohen
Journal of Systems and Software 119, 122-135, 2016
452016
Navigating the maze: the impact of configurability in bioinformatics software
M Cashman, MB Cohen, P Ranjan, RW Cottingham
Proceedings of the 33rd ACM/IEEE International Conference on Automated …, 2018
382018
Metabolic feedback inhibition influences metabolite secretion by the human gut symbiont Bacteroides thetaiotaomicron
JL Catlett, J Catazaro, M Cashman, S Carr, R Powers, MB Cohen, ...
Msystems 5 (5), 10.1128/msystems. 00252-20, 2020
282020
Metabolic Synergy between Human Symbionts Bacteroides and Methanobrevibacter
JL Catlett, S Carr, M Cashman, MD Smith, M Walter, Z Sakkaff, C Kelley, ...
Microbiology spectrum 10 (3), e01067-22, 2022
212022
Reusability first: Toward FAIR workflows
M Wolf, J Logan, K Mehta, D Jacobson, M Cashman, AM Walker, ...
2021 IEEE International Conference on Cluster Computing (CLUSTER), 444-455, 2021
172021
End-to-end molecular communication channels in cell metabolism: an information theoretic study
Z Sakkaff, JL Catlett, M Cashman, M Pierobon, NR Buan, MB Cohen, ...
Proceedings of the 4th ACM International Conference on Nanoscale Computing …, 2017
172017
Using a genetic algorithm to optimize configurations in a data-driven application
U Sinha, M Cashman, MB Cohen
Search-Based Software Engineering: 12th International Symposium, SSBSE 2020 …, 2020
142020
Spatial graph attention and curiosity-driven policy for antiviral drug discovery
Y Wu, M Cashman, N Choma, ÉT Prates, VGM Vergara, M Shah, A Chen, ...
The International Conference on Learning Representations (ICLR), 2022
112022
DNA as features: organic software product lines
M Cashman, J Firestone, MB Cohen, T Thianniwet, W Niu
Proceedings of the 23rd International Systems and Software Product Line …, 2019
102019
Climatic clustering and longitudinal analysis with impacts on food, bioenergy, and pandemics
J Lagergren, M Cashman, VGM Vergara, PR Eller, JGFM Gazolla, ...
Phytobiomes Journal 7 (1), 65-77, 2023
72023
BioSIMP: using software testing techniques for sampling and inference in biological organisms
M Cashman, JL Catlett, MB Cohen, NR Buan, Z Sakkaff, M Pierobon, ...
2017 IEEE/ACM 12th International Workshop on Software Engineering for …, 2017
72017
Genetics of varicose veins reveals polygenic architecture and genetic overlap with arterial and venous disease
MG Levin, JE Huffman, A Verma, KA Sullivan, AA Rodriguez, D Kainer, ...
Nature Cardiovascular Research 2 (1), 44-57, 2023
42023
An empirical investigation of organic software product lines
M Cashman, J Firestone, MB Cohen, T Thianniwet, W Niu
Empirical Software Engineering 26 (3), 44, 2021
42021
Exploring the role of plant lysin motif receptor-like kinases in regulating plant-microbe interactions in the bioenergy crop Populus
KR Cope, ET Prates, JI Miller, ONA Demerdash, M Shah, D Kainer, A Cliff, ...
Computational and Structural Biotechnology Journal 21, 1122-1139, 2023
32023
dkainer/RWRtoolkit
D Kainer, M Lane, K Sullivan, M Cashman, JI Miller
Oak Ridge National Lab.(ORNL), Oak Ridge, TN (United States), 2022
32022
Digging deeper into GWAS signal using GRIN implicates additional genes contributing to suicidal behavior
KA Sullivan, M Lane, M Cashman, JI Miller, M Pavicic, AM Walker, A Cliff, ...
medRxiv, 2022.04. 20.22273895, 2022
22022
A Molecular Communication model for cellular metabolism
Z Sakkaff, AP Freiburger, JL Catlett, M Cashman, A Immaneni, NR Buan, ...
bioRxiv, 2023.06. 28.546976, 2023
12023
Supporting data for climatic clustering and longitudinal analysis with impacts on food, bioenergy, and pandemics
J Lagergren, M Cashman, V Melesse Vergara, P Eller, J Gazolla, ...
Oak Ridge National Lab.(ORNL), Oak Ridge, TN (United States). Oak Ridge …, 2021
12021
Identifying Biological Pathways Underlying Switchgrass Bioenergy Traits Using Arabidopsis thaliana Exascale/Petascale Complexity Networks Deployed in KBase
K Sullivan, MJ Lane, D Kainer, DD Blair, HB Chhetri, YQ Wang, M Morgan, ...
Plant and Animal Genome Conference/PAG 31 (January 12-17, 2024), 2024
2024
MENTOR: Multiplex Embedding of Networks for Team-Based Omics Research
KA Sullivan, JI Miller, A Townsend, M Morgan, M Lane, M Pavicic, M Shah, ...
bioRxiv, 2024.07. 17.603821, 2024
2024
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