Simone S Li
Simone S Li
EMBO Research Fellow, Novo Nordisk Center for Biosustainability (Technical University of Denmark)
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Durable coexistence of donor and recipient strains after fecal microbiota transplantation
SS Li, A Zhu, V Benes, PI Costea, R Hercog, F Hildebrand, ...
Science 352 (6285), 586-589, 2016
Temporal and technical variability of human gut metagenomes
AY Voigt, PI Costea, JR Kultima, SS Li, G Zeller, S Sunagawa, P Bork
Genome biology 16 (1), 73, 2015
MOCAT2: a metagenomic assembly, annotation and profiling framework
JR Kultima, LP Coelho, K Forslund, J Huerta-Cepas, SS Li, M Driessen, ...
Bioinformatics 32 (16), 2520-2523, 2016
Extensive transmission of microbes along the gastrointestinal tract
TSB Schmidt, MR Hayward, LP Coelho, SS Li, PI Costea, AY Voigt, ...
eLife 8, e42693, 2019
proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes
DR Mende, I Letunic, J Huerta-Cepas, SS Li, K Forslund, S Sunagawa, ...
Nucleic acids research 45 (D1), D529-D534, 2017
Sequencing and validation of the genome of a Campylobacter concisus reveals intra-species diversity
NP Deshpande, NO Kaakoush, H Mitchell, K Janitz, MJ Raftery, SS Li, ...
PLoS One 6 (7), e22170, 2011
A genome-wide screen in yeast identifies specific oxidative stress genes required for the maintenance of sub-cellular redox homeostasis
A Ayer, S Fellermeier, C Fife, SS Li, G Smits, AJ Meyer, IW Dawes, ...
PLoS One 7 (9), e44278, 2012
Visualization and analysis of the complexome network of Saccharomyces cerevisiae
SS Li, K Xu, MR Wilkins
Journal of proteome research 10 (10), 4744-4756, 2011
Four‐dimensional visualisation and analysis of protein–protein interaction networks
A Goel, SS Li, MR Wilkins
Proteomics 11 (13), 2672-2682, 2011
The Interactorium: Visualising proteins, complexes and interaction networks in a virtual 3‐D cell
YY Widjaja, CNI Pang, SS Li, MR Wilkins, TD Lambert
Proteomics 9 (23), 5309-5315, 2009
Time-course proteome analysis reveals the dynamic response of Cryptococcus gattii cells to fluconazole
HS Chong, L Campbell, MP Padula, C Hill, E Harry, SS Li, MR Wilkins, ...
PloS one 7 (8), e42835, 2012
Proteins deleterious on overexpression are associated with high intrinsic disorder, specific interaction domains, and low abundance
L Ma, CNI Pang, SS Li, MR Wilkins
Journal of Proteome Research 9 (3), 1218-1225, 2010
Visualization of the interactome: What are we looking at?
DCY Fung, SS Li, A Goel, SH Hong, MR Wilkins
Proteomics 12 (10), 1669-1686, 2012
Disturbed protein–protein interaction networks in metastatic melanoma are associated with worse prognosis and increased functional mutation burden
SJ Schramm, SS Li, V Jayaswal, DCY Fung, AE Campain, CNI Pang, ...
Pigment cell & melanoma research 26 (5), 708-722, 2013
Molecular interaction networks for the analysis of human disease: Utility, limitations, and considerations
SJ Schramm, V Jayaswal, A Goel, SS Li, YH Yang, GJ Mann, MR Wilkins
Proteomics 13 (23-24), 3393-3405, 2013
A Multidimensional Matrix for Systems Biology Research and Its Application to Interaction Networks
CNI Pang, A Goel, SS Li, MR Wilkins
Journal of Proteome Research 11 (11), 5204-5220, 2012
Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity
OM Maistrenko, DR Mende, M Luetge, F Hildebrand, TSB Schmidt, SS Li, ...
The ISME Journal, 1-13, 2020
Abstract P4-10-02: Targeted resequencing of BRCA1 and BRCA2 in inherited breast cancer
MW Wong-Brown, S Li, M Wilkins, KA Avery-Kiejda, NA Bowden, RJ Scott
Cancer Research 72 (24 Supplement), P4-10-02-P4-10-02, 2012
The dynamic response of Cryptococcus gattii cells to fluconazole: a time-course analysis of the proteome and interactome
HS Chong, LT Campbell, MP Padula, E Harry, C Hill, S Li, B Herbert, ...
Mycoses 55 (s4), 115-116, 2012
GEOMI: a tool for integrated systems biology research
S Li, A Goel, A Lee, CNI Pang, MR Wilkins
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