Genome sequencing of normal cells reveals developmental lineages and mutational processes S Behjati, M Huch, R van Boxtel, W Karthaus, DC Wedge, AU Tamuri, ... Nature, 10.1038/nature13448, 2014 | 359 | 2014 |
Transcriptional diversity during lineage commitment of human blood progenitors L Chen, M Kostadima, JHA Martens, G Canu, SP Garcia, E Turro, ... Science 345 (6204), 1251033, 2014 | 311 | 2014 |
Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination J Cudini, S Roy, CJ Houldcroft, JM Bryant, DP Depledge, H Tutill, P Veys, ... Proceedings of the National Academy of Sciences 116 (12), 5693-5698, 2019 | 139 | 2019 |
Identifying changes in selective constraints: host shifts in influenza AU Tamuri, M dos Reis, AJ Hay, RA Goldstein PLoS Computational Biology 5 (11), e1000564, 2009 | 131 | 2009 |
SMIM1 underlies the Vel blood group and influences red blood cell traits A Cvejic, L Haer-Wigman, JC Stephens, M Kostadima, PA Smethurst, ... Nature Genetics, 2013 | 124 | 2013 |
Estimating the Distribution of Selection Coefficients from Phylogenetic Data Using Sitewise Mutation-Selection Models AU Tamuri, M dos Reis, RA Goldstein Genetics 190 (3), 1101-1115, 2012 | 120 | 2012 |
A species-level timeline of mammal evolution integrating phylogenomic data S Álvarez-Carretero, AU Tamuri, M Battini, FF Nascimento, E Carlisle, ... Nature 602 (7896), 263-267, 2022 | 76 | 2022 |
Alignment modulates ancestral sequence reconstruction accuracy RA Vialle, AU Tamuri, N Goldman Molecular biology and evolution 35 (7), 1783-1797, 2018 | 64 | 2018 |
PCR master mixes harbour murine DNA sequences. Caveat emptor! PW Tuke, KI Tettmar, AU Tamuri, JP Stoye, RS Tedder PLoS ONE 6 (5), e19953, 2011 | 64 | 2011 |
A Penalized Likelihood Method for Estimating the Distribution of Selection Coefficients from Phylogenetic Data AU Tamuri, N Goldman, M dos Reis Genetics 197 (5), 257-271, 2014 | 59 | 2014 |
Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data O Stirrup, J Hughes, M Parker, DG Partridge, JG Shepherd, J Blackstone, ... Elife 10, e65828, 2021 | 39 | 2021 |
Charting the host adaptation of influenza viruses M dos Reis, AU Tamuri, AJ Hay, RA Goldstein Molecular biology and evolution 28 (6), 1755, 2011 | 39 | 2011 |
Rapid morphological evolution in placental mammals post-dates the origin of the crown group TJD Halliday, M Dos Reis, AU Tamuri, H Ferguson-Gow, Z Yang, ... Proceedings of the Royal Society B 286 (1898), 20182418, 2019 | 38 | 2019 |
ArchSchema: a tool for interactive graphing of related Pfam domain architectures AU Tamuri, RA Laskowski Bioinformatics 26 (9), 1260-1261, 2010 | 27 | 2010 |
Haplotype assignment of longitudinal viral deep-sequencing data using co-variation of variant frequencies J Pang, C Venturini, AU Tamuri, S Roy, J Breuer, RA Goldstein BioRxiv, 444877, 2018 | 15 | 2018 |
ALVIS: interactive non-aggregative visualization and explorative analysis of multiple sequence alignments RF Schwarz, AU Tamuri, M Kultys, J King, J Godwin, AM Florescu, ... Nucleic Acids Research 44 (8), e77-e77, 2016 | 12 | 2016 |
Effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control for hospital-onset COVID-19 infection: Multicentre, prospective study O Stirrup, J Blackstone, F Mapp, A MacNeil, M Panca, A Holmes, ... Elife 11, e78427, 2022 | 11 | 2022 |
A Mutation–Selection Model of Protein Evolution under Persistent Positive Selection AU Tamuri, M Dos Reis Molecular Biology and Evolution 39 (1), msab309, 2022 | 8 | 2022 |
Treesub: annotating ancestral substitutions on a tree AU Tamuri https://github.com/tamuri/treesub, 2013 | 7 | 2013 |
Avoiding ascertainment bias in the maximum likelihood inference of phylogenies based on truncated data AU Tamuri, N Goldman bioRxiv, 186478, 2017 | 5 | 2017 |