Benno Schwikowski
Benno Schwikowski
Head, Computational Systems Biomedicine Lab, Pasteur Institute, Paris
Verified email at - Homepage
Cited by
Cited by
Cytoscape: a software environment for integrated models of biomolecular interaction networks
P Shannon, A Markiel, O Ozier, NS Baliga, JT Wang, D Ramage, N Amin, ...
Genome research 13 (11), 2498-2504, 2003
Integration of biological networks and gene expression data using Cytoscape
MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ...
Nature protocols 2 (10), 2366-2382, 2007
A network of protein–protein interactions in yeast
B Schwikowski, P Uetz, S Fields
Nature biotechnology 18 (12), 1257-1261, 2000
Discovering regulatory and signalling circuits in molecular interaction networks
T Ideker, O Ozier, B Schwikowski, AF Siegel
Bioinformatics 18 (suppl_1), S233-S240, 2002
Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis
P Nicolas, U Mäder, E Dervyn, T Rochat, A Leduc, N Pigeonneau, ...
Science 335 (6072), 1103-1106, 2012
Graph-based methods for analysing networks in cell biology
T Aittokallio, B Schwikowski
Briefings in bioinformatics 7 (3), 243-255, 2006
Host-viral infection maps reveal signatures of severe COVID-19 patients
P Bost, A Giladi, Y Liu, Y Bendjelal, G Xu, E David, R Blecher-Gonen, ...
Cell 181 (7), 1475-1488. e12, 2020
Autoantibodies neutralizing type I IFNs are present in~ 4% of uninfected individuals over 70 years old and account for~ 20% of COVID-19 deaths
P Bastard, A Gervais, T Le Voyer, J Rosain, Q Philippot, J Manry, ...
Science immunology 6 (62), eabl4340, 2021
Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism
JM Buescher, W Liebermeister, M Jules, M Uhr, J Muntel, E Botella, ...
Science 335 (6072), 1099-1103, 2012
ProbID: a probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data
N Zhang, R Aebersold, B Schwikowski
Proteomics 2 (10), 1406-1412, 2002
Algorithms for phylogenetic footprinting
M Blanchette
Proceedings of the fifth annual international conference on Computational …, 2001
Functional analysis via standardized whole-blood stimulation systems defines the boundaries of a healthy immune response to complex stimuli
D Duffy, V Rouilly, V Libri, M Hasan, B Beitz, M David, A Urrutia, A Bisiaux, ...
Immunity 40 (3), 436-450, 2014
Distinctive roles of age, sex, and genetics in shaping transcriptional variation of human immune responses to microbial challenges
B Piasecka, D Duffy, A Urrutia, H Quach, E Patin, C Posseme, J Bergstedt, ...
Proceedings of the National Academy of Sciences 115 (3), E488-E497, 2018
From the exposome to mechanistic understanding of chemical-induced adverse effects
BI Escher, J Hackermüller, T Polte, S Scholz, A Aigner, R Altenburger, ...
Environment international 99, 97-106, 2017
Signal maps for mass spectrometry-based comparative proteomics
A Prakash, P Mallick, J Whiteaker, H Zhang, A Paulovich, M Flory, H Lee, ...
Molecular & Cellular Proteomics 5 (3), 423-432, 2006
GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring
O Garcia, C Saveanu, M Cline, M Fromont-Racine, A Jacquier, ...
Bioinformatics 23 (3), 394-396, 2007
The risk of COVID-19 death is much greater and age dependent with type I IFN autoantibodies
J Manry, P Bastard, A Gervais, T Le Voyer, J Rosain, Q Philippot, ...
Proceedings of the National Academy of Sciences 119 (21), 2022
Alignment of LC‐MS images, with applications to biomarker discovery and protein identification
M Vandenbogaert, S Li‐Thiao‐Té, HM Kaltenbach, R Zhang, T Aittokallio, ...
Proteomics 8 (4), 650-672, 2008
Deciphering the state of immune silence in fatal COVID-19 patients
P Bost, F De Sanctis, S Canè, S Ugel, K Donadello, M Castellucci, D Eyal, ...
Nature communications 12 (1), 1428, 2021
Bystander IFN-γ activity promotes widespread and sustained cytokine signaling altering the tumor microenvironment
R Thibaut, P Bost, I Milo, M Cazaux, F Lemaître, Z Garcia, I Amit, B Breart, ...
Nature cancer 1 (3), 302-314, 2020
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