| Bioinformatics resources and tools for conformational B-cell epitope prediction P Sun, H Ju, Z Liu, Q Ning, J Zhang, X Zhao, Y Huang, Z Ma, Y Li Computational and mathematical methods in medicine 2013, 2013 | 139 | 2013 |
| PSNO: Predicting Cysteine S-Nitrosylation Sites by Incorporating Various Sequence-Derived Features into the General Form of Chou’s PseAAC J Zhang, X Zhao, P Sun, Z Ma International Journal of Molecular Sciences 15 (7), 11204-11219, 2014 | 116 | 2014 |
| Comprehensive review and empirical analysis of hallmarks of DNA-, RNA-and protein-binding residues in protein chains J Zhang, Z Ma, L Kurgan Briefings in bioinformatics 20 (4), 1250-1268, 2019 | 103 | 2019 |
| Prediction of Protein Phosphorylation Sites by Using the Composition of k-Spaced Amino Acid Pairs X Zhao, W Zhang, X Xu, Z Ma, M Yin Public Library of Science 7 (10), e46302, 2012 | 69 | 2012 |
| dForml (KNN)-PseAAC: Detecting formylation sites from protein sequences using K-nearest neighbor algorithm via Chou's 5-step rule and pseudo components Q Ning, Z Ma, X Zhao Journal of theoretical biology 470, 43-49, 2019 | 67 | 2019 |
| Predicting protein-protein interactions by combing various sequence-derived features into the general form of Chou’s Pseudo amino acid composition XW Zhao, ZQ Ma, MH Yin Protein and peptide letters 19 (5), 492-500, 2012 | 59 | 2012 |
| Understanding membrane protein drug targets in computational perspective J Gong, Y Chen, F Pu, P Sun, F He, L Zhang, Y Li, Z Ma, H Wang Current Drug Targets 20 (5), 551-564, 2019 | 58 | 2019 |
| iCircRBP-DHN: identification of circRNA-RBP interaction sites using deep hierarchical network Y Yang, Z Hou, Z Ma, X Li, KC Wong Briefings in Bioinformatics 22 (4), bbaa274, 2021 | 53 | 2021 |
| Accurate in silico identification of protein succinylation sites using an iterative semi-supervised learning technique X Zhao, Q Ning, H Chai, Z Ma Journal of theoretical biology 374, 60-65, 2015 | 52 | 2015 |
| Prediction of lysine ubiquitylation with ensemble classifier and feature selection X Zhao, X Li, Z Ma, M Yin International Journal of Molecular Sciences 12 (12), 8347-8361, 2011 | 49 | 2011 |
| Using support vector machine and evolutionary profiles to predict antifreeze protein sequences X Zhao, Z Ma, M Yin International journal of molecular sciences 13 (2), 2196-2207, 2012 | 48 | 2012 |
| MimoPro: a more efficient Web-based tool for epitope prediction using phage display libraries WH Chen, PP Sun, Y Lu, WW Guo, YX Huang, ZQ Ma BMC bioinformatics 12, 1-13, 2011 | 47 | 2011 |
| Deep learning architecture for iris recognition based on optimal Gabor filters and deep belief network F He, Y Han, H Wang, J Ji, Y Liu, Z Ma Journal of Electronic Imaging 26 (2), 023005-023005, 2017 | 44 | 2017 |
| Identification of DNA-binding proteins using multi-features fusion and binary firefly optimization algorithm J Zhang, B Gao, H Chai, Z Ma, G Yang BMC bioinformatics 17, 1-12, 2016 | 44 | 2016 |
| PECM: Prediction of extracellular matrix proteins using the concept of Chou’s pseudo amino acid composition J Zhang, P Sun, X Zhao, Z Ma Journal of Theoretical Biology 363, 412-418, 2014 | 44 | 2014 |
| Hybrid differential evolution and gravitation search algorithm for unconstrained optimization X Li, M Yin, Z Ma Int. J. Phys. Sci 6 (25), 5961-5981, 2011 | 44 | 2011 |
| Detecting succinylation sites from protein sequences using ensemble support vector machine Q Ning, X Zhao, L Bao, Z Ma, X Zhao BMC bioinformatics 19 (1), 1-9, 2018 | 43 | 2018 |
| Advances in in-silico B-cell epitope prediction P Sun, S Guo, J Sun, L Tan, C Lu, Z Ma Current Topics in Medicinal Chemistry 19 (2), 105-115, 2019 | 38 | 2019 |
| Conformational B-cell epitopes prediction from sequences using cost-sensitive ensemble classifiers and spatial clustering J Zhang, X Zhao, P Sun, B Gao, Z Ma BioMed research international 2014, 2014 | 35 | 2014 |
| A novel method for Identification of Glutarylation sites combining Borderline-SMOTE with Tomek links technique in imbalanced data Q Ning, X Zhao, Z Ma IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (5 …, 2021 | 34 | 2021 |
