Digestive system is a potential route of COVID-19: an analysis of single-cell coexpression pattern of key proteins in viral entry process H Zhang, Z Kang, H Gong, D Xu, J Wang, Z Li, Z Li, X Cui, J Xiao, J Zhan, ... Gut 69 (6), 1010-1018, 2020 | 514 | 2020 |
Real-time reliable determination of binding kinetics of DNA hybridization using a multi-channel graphene biosensor S Xu, J Zhan, B Man, S Jiang, W Yue, S Gao, C Guo, H Liu, Z Li, J Wang, ... Nature communications 8 (1), 14902, 2017 | 400 | 2017 |
Community-wide assessment of protein-interface modeling suggests improvements to design methodology SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... Journal of molecular biology 414 (2), 289-302, 2011 | 156 | 2011 |
Energy functions in de novo protein design: current challenges and future prospects Z Li, Y Yang, J Zhan, L Dai, Y Zhou Annual review of biophysics 42, 315-335, 2013 | 101 | 2013 |
A new size‐independent score for pairwise protein structure alignment and its application to structure classification and nucleic‐acid binding prediction Y Yang, J Zhan, H Zhao, Y Zhou PROTEINS: structure, Function, and Bioinformatics 80 (8), 2080-2088, 2012 | 93 | 2012 |
Direct prediction of profiles of sequences compatible with a protein structure by neural networks with fragment‐based local and energy‐based nonlocal profiles Z Li, Y Yang, E Faraggi, J Zhan, Y Zhou Proteins: Structure, Function, and Bioinformatics 82 (10), 2565-2573, 2014 | 75 | 2014 |
Develop reusable and combinable designs for transcriptional logic gates J Zhan, B Ding, R Ma, X Ma, X Su, Y Zhao, Z Liu, J Wu, H Liu Molecular systems biology 6 (1), 388, 2010 | 70 | 2010 |
Optimal secretion of alkali-tolerant xylanase in Bacillus subtilis by signal peptide screening W Zhang, M Yang, Y Yang, J Zhan, Y Zhou, X Zhao Applied Microbiology and Biotechnology 100, 8745-8756, 2016 | 50 | 2016 |
Repurposing clinically approved drugs for COVID-19 treatment targeting SARS-CoV-2 papain-like protease Y Xu, K Chen, J Pan, Y Lei, D Zhang, L Fang, J Tang, X Chen, Y Ma, ... International journal of biological macromolecules 188, 137-146, 2021 | 35 | 2021 |
Design and evaluation of a novel peptide–drug conjugate covalently targeting SARS-CoV-2 papain-like protease N Liu, Y Zhang, Y Lei, R Wang, M Zhan, J Liu, Y An, Y Zhou, J Zhan, F Yin, ... Journal of Medicinal Chemistry 65 (1), 876-884, 2022 | 34 | 2022 |
RNAcmap: a fully automatic pipeline for predicting contact maps of RNAs by evolutionary coupling analysis T Zhang, J Singh, T Litfin, J Zhan, K Paliwal, Y Zhou Bioinformatics 37 (20), 3494-3500, 2021 | 30 | 2021 |
Pairing a high-resolution statistical potential with a nucleobase-centric sampling algorithm for improving RNA model refinement P Xiong, R Wu, J Zhan, Y Zhou Nature communications 12 (1), 2777, 2021 | 29 | 2021 |
Genome-scale characterization of RNA tertiary structures and their functional impact by RNA solvent accessibility prediction Y Yang, X Li, H Zhao, J Zhan, J Wang, Y Zhou Rna 23 (1), 14-22, 2017 | 28 | 2017 |
SPOT‐Ligand: fast and effective structure‐based virtual screening by binding homology search according to ligand and receptor similarity Y Yang, J Zhan, Y Zhou Journal of Computational Chemistry 37 (18), 1734-1739, 2016 | 20 | 2016 |
Accurate inference of the full base-pairing structure of RNA by deep mutational scanning and covariation-induced deviation of activity Z Zhang, P Xiong, T Zhang, J Wang, J Zhan, Y Zhou Nucleic acids research 48 (3), 1451-1465, 2020 | 19 | 2020 |
Probing RNA structures and functions by solvent accessibility: an overview from experimental and computational perspectives M Solayman, T Litfin, J Singh, K Paliwal, Y Zhou, J Zhan Briefings in Bioinformatics 23 (3), bbac112, 2022 | 17 | 2022 |
Structural signatures of thermal adaptation of bacterial ribosomal RNA, transfer RNA, and messenger RNA C Jegousse, Y Yang, J Zhan, J Wang, Y Zhou PLoS One 12 (9), e0184722, 2017 | 17 | 2017 |
Investigation the possibility of using peptides with a helical repeating pattern of hydro-phobic and hydrophilic residues to inhibit IL-10 G Ni, S Chen, Y Yang, SF Cummins, J Zhan, Z Li, B Zhu, K Mounsey, ... PloS one 11 (4), e0153939, 2016 | 15 | 2016 |
B‐factor profile prediction for RNA flexibility using support vector machines I Guruge, G Taherzadeh, J Zhan, Y Zhou, Y Yang Journal of Computational Chemistry 39 (8), 407-411, 2018 | 13 | 2018 |
YesU from Bacillus subtilis preferentially binds fucosylated glycans J Tiralongo, O Cooper, T Litfin, Y Yang, R King, J Zhan, H Zhao, N Bovin, ... Scientific reports 8 (1), 13139, 2018 | 12 | 2018 |