|B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes|
JNH Stern, G Yaari, JA Vander Heiden, G Church, WF Donahue, ...
Science translational medicine 6 (248), 248ra107-248ra107, 2014
|Reprogramming of T cells from human peripheral blood|
YH Loh, O Hartung, H Li, C Guo, JM Sahalie, PD Manos, A Urbach, ...
Cell stem cell 7 (1), 15-19, 2010
|pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires|
JA Vander Heiden, G Yaari, M Uduman, JNH Stern, KC O’Connor, ...
Bioinformatics 30 (13), 1930-1932, 2014
|High-throughput single cell barcoding|
GM Church, F Vigneault
US Patent 9,902,950, 2018
|The effects of somatic hypermutation on neutralization and binding in the PGT121 family of broadly neutralizing HIV antibodies|
D Sok, U Laserson, J Laserson, Y Liu, F Vigneault, JP Julien, B Briney, ...
PLoS pathogens 9 (11), e1003754, 2013
|Models of somatic hypermutation targeting and substitution based on synonymous mutations from high-throughput immunoglobulin sequencing data|
G Yaari, JA Vander Heiden, M Uduman, D Gadala-Maria, N Gupta, ...
Frontiers in immunology 4, 358, 2013
|High-resolution antibody dynamics of vaccine-induced immune responses|
U Laserson, F Vigneault, D Gadala-Maria, G Yaari, M Uduman, ...
Proceedings of the National Academy of Sciences 111 (13), 4928-4933, 2014
|Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers|
SJ Spencer, MV Tamminen, SP Preheim, MT Guo, AW Briggs, IL Brito, ...
The ISME journal 10 (2), 427-436, 2016
|Systematic identification of edited microRNAs in the human brain|
S Alon, E Mor, F Vigneault, GM Church, F Locatelli, F Galeano, A Gallo, ...
Genome research 22 (8), 1533-1540, 2012
|Salmonella infection drives promiscuous B cell activation followed by extrafollicular affinity maturation|
R Di Niro, SJ Lee, JA Vander Heiden, RA Elsner, N Trivedi, JM Bannock, ...
Immunity 43 (1), 120-131, 2015
|Single cell bar-coding for antibody discovery|
F Vigneault, AW BRIGGS
US Patent 9,816,088, 2017
|Barcoding bias in high-throughput multiplex sequencing of miRNA|
S Alon, F Vigneault, S Eminaga, DC Christodoulou, JG Seidman, ...
Genome research 21 (9), 1506-1511, 2011
|Enzymatic oligonucleotide pre-adenylation|
GM Church, F Vigneault, M Sismour
US Patent App. 12/533,304, 2010
|Hierarchical clustering can identify B cell clones with high confidence in Ig repertoire sequencing data|
NT Gupta, KD Adams, AW Briggs, SC Timberlake, F Vigneault, ...
The Journal of Immunology 198 (6), 2489-2499, 2017
|Dysregulation of B cell repertoire formation in myasthenia gravis patients revealed through deep sequencing|
JA Vander Heiden, P Stathopoulos, JQ Zhou, L Chen, TJ Gilbert, ...
The Journal of Immunology 198 (4), 1460-1473, 2017
|High-throughput nucleotide library sequencing|
F Vigneault, AW Briggs, CR Clouser, SJ Goldfless, S Timberlake
US Patent 10,590,483, 2020
|Efficient microRNA capture and bar-coding via enzymatic oligonucleotide adenylation|
F Vigneault, AM Sismour, GM Church
Nature methods 5 (9), 777-779, 2008
|Quantification of microRNA expression with next‐generation sequencing|
S Eminaga, DC Christodoulou, F Vigneault, GM Church, JG Seidman
Current protocols in molecular biology 103 (1), 4.17. 1-4.17. 14, 2013
|Transcriptional profiling of CD4 T cells identifies distinct subgroups of HIV-1 elite controllers|
F Vigneault, M Woods, MJ Buzon, C Li, F Pereyra, SD Crosby, J Rychert, ...
Journal of virology 85 (6), 3015-3019, 2011
|Neutralizing antibodies against West Nile virus identified directly from human B cells by single-cell analysis and next generation sequencing|
K Tsioris, NT Gupta, AO Ogunniyi, RM Zimnisky, F Qian, Y Yao, X Wang, ...
Integrative Biology 7 (12), 1587-1597, 2015