| Predicting protein–protein interactions through sequence-based deep learning S Hashemifar, B Neyshabur, AA Khan, J Xu Bioinformatics 34 (17), i802-i810, 2018 | 315 | 2018 |
| NETAL: a new graph-based method for global alignment of protein–protein interaction networks B Neyshabur, A Khadem, S Hashemifar, SS Arab Bioinformatics 29 (13), 1654-1662, 2013 | 207 | 2013 |
| Hubalign: an accurate and efficient method for global alignment of protein–protein interaction networks S Hashemifar, J Xu Bioinformatics 30 (17), i438-i444, 2014 | 138 | 2014 |
| Differential cell-intrinsic regulations of germinal center B and T cells by miR-146a and miR-146b S Cho, HM Lee, IS Yu, YS Choi, HY Huang, SS Hashemifar, LL Lin, ... Nature communications 9 (1), 2757, 2018 | 63 | 2018 |
| Excessive expression of miR-27 impairs Treg-mediated immunological tolerance LO Cruz, SS Hashemifar, CJ Wu, S Cho, DT Nguyen, LL Lin, AA Khan, ... The Journal of clinical investigation 127 (2), 530-542, 2017 | 59 | 2017 |
| ModuleAlign: module-based global alignment of protein–protein interaction networks S Hashemifar, J Ma, H Naveed, S Canzar, J Xu Bioinformatics 32 (17), i658-i664, 2016 | 52 | 2016 |
| Joint alignment of multiple protein–protein interaction networks via convex optimization S Hashemifar, Q Huang, J Xu Journal of Computational Biology 23 (11), 903-911, 2016 | 26 | 2016 |
| Novel candidate genes in esophageal atresia/tracheoesophageal fistula identified by exome sequencing J Wang, PR Ahimaz, S Hashemifar, J Khlevner, JA Picoraro, ... European Journal of Human Genetics 29 (1), 122-130, 2021 | 20 | 2021 |
| Chemokine expression in the early response to injury in human airway epithelial cells B Xie, B Laxman, S Hashemifar, R Stern, TC Gilliam, N Maltsev, SR White PLoS One 13 (3), e0193334, 2018 | 9 | 2018 |
| Lynx: a knowledge base and an analytical workbench for integrative medicine D Sulakhe, B Xie, A Taylor, M D'Souza, S Balasubramanian, ... Nucleic acids research 44 (D1), D882-D887, 2016 | 8 | 2016 |
| Automated detection of progressive speech changes in early Alzheimer's disease J Robin, M Xu, A Balagopalan, J Novikova, L Kahn, A Oday, M Hejrati, ... Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring 15 (2 …, 2023 | 6 | 2023 |
| DeepAD: A Robust Deep Learning Model of Alzheimer's Disease Progression for Real-World Clinical Applications S Hashemifar, C Iriondo, E Casey, M Hejrati arXiv preprint arXiv:2203.09096, 2022 | 5 | 2022 |
| Strategic integration of multiple bioinformatics resources for system level analysis of biological networks M D’Souza, D Sulakhe, S Wang, B Xie, S Hashemifar, A Taylor, I Dubchak, ... Biological Networks and Pathway Analysis, 85-99, 2017 | 3 | 2017 |
| Multiclass Semantic Segmentation to Identify Anatomical Sub-Regions of Brain and Measure Neuronal Health in Parkinson's Disease H Barzekar, H Ngu, HH Lin, M Hejrati, SR Valdespino, S Chu, B Bingol, ... arXiv preprint arXiv:2301.02925, 2023 | 2 | 2023 |
| Self-supervised Learning for Segmentation and Quantification of Dopamine Neurons in $ text {Parkinson's Disease F Haghighi, S Ghosh, H Ngu, S Chu, H Lin, M Hejrati, B Bingol, ... arXiv preprint, 2023 | 2 | 2023 |
| Multiclass semantic segmentation mediated neuropathological readout in Parkinson's disease H Barzekar, H Ngu, HH Lin, M Hejrati, SR Valdespino, S Chu, B Bingol, ... Neuroscience Informatics 3 (2), 100131, 2023 | 1 | 2023 |
| Self-supervised Learning for Segmentation and Quantification of Dopamine Neurons in Parkinson's Disease F Haghighi, S Ghosh, H Ngu, S Chu, H Lin, M Hejrati, B Bingol, ... arXiv preprint arXiv:2301.08141, 2023 | 1 | 2023 |
| Characterizing progressive speech changes in prodromal-to-mild Alzheimer’s disease using natural language processing J Robin, M Xu, A Balagopalan, J Novikova, L Kahn, A Oday, M Hejrati, ... Alzheimers Dement 18, e063244, 2022 | 1 | 2022 |
| ASSOCIATION BETWEEN SPEECH CHARACTERISTICS AND CORTICAL [18F] GTP1 TAU PET TAU LEVELS IN PRODROMAL-TO-MILD ALZHEIMER’S DISEASE J Robin, M Xu, A Balagopalan, J Novikova, S Hashemifar, A Oday, L Kahn, ... International Conference on Alzheimer's and Parkinson's Diseases and related …, 2022 | 1 | 2022 |
| Computational prediction and analysis of protein-protein interaction networks S Hashemifar arXiv preprint arXiv:1709.01923, 2017 | 1 | 2017 |
