| A novel algorithm and web-based tool for comparing two alternative phylogenetic trees TMW Nye, P Lio, WR Gilks Bioinformatics 22 (1), 117-119, 2006 | 204 | 2006 |
| A congruent phylogenomic signal places eukaryotes within the Archaea TA Williams, PG Foster, TMW Nye, CJ Cox, TM Embley Proceedings of the Royal Society B: Biological Sciences 279 (1749), 4870-4879, 2012 | 169 | 2012 |
| A synchrotron X-ray study of melting and recrystallization in isotactic polypropylene AJ Ryan, JL Stanford, W Bras, TMW Nye Polymer 38 (4), 759--768, 1997 | 147 | 1997 |
| Statistical analysis of domains in interacting protein pairs TMW Nye, C Berzuini, WR Gilks, MM Babu, SA Teichmann Bioinformatics 21 (7), 993-1001, 2005 | 116 | 2005 |
| Principal components analysis in the space of phylogenetic trees TMW Nye The Annals of Statistics, 2716-2739, 2011 | 98 | 2011 |
| An L2-index theorem for Dirac operators on S1× R3 TMW Nye, MA Singer Journal of Functional Analysis 177 (1), 203-218, 2000 | 89 | 2000 |
| New substitution models for rooting phylogenetic trees TA Williams, SE Heaps, S Cherlin, TMW Nye, RJ Boys, TM Embley Philosophical Transactions of the Royal Society B: Biological Sciences 370 …, 2015 | 66 | 2015 |
| Trees of trees: an approach to comparing multiple alternative phylogenies TMW Nye Systematic biology 57 (5), 785-794, 2008 | 52 | 2008 |
| Principal component analysis and the locus of the Fréchet mean in the space of phylogenetic trees TMW Nye, X Tang, G Weyenberg, R Yoshida Biometrika 104 (4), 901-922, 2017 | 48 | 2017 |
| The geometry of calorons TMW Nye arXiv preprint hep-th/0311215, 2003 | 31 | 2003 |
| Information geometry for phylogenetic trees MK Garba, TMW Nye, J Lueg, SF Huckemann Journal of Mathematical Biology 82, 1-39, 2021 | 28 | 2021 |
| An algorithm for constructing principal geodesics in phylogenetic treespace TMW Nye IEEE/ACM Transactions on Computational Biology and Bioinformatics 11 (2 …, 2014 | 26 | 2014 |
| Random walks and Brownian motion on cubical complexes TMW Nye Stochastic Processes and their Applications 130 (4), 2185-2199, 2020 | 22* | 2020 |
| Time-Resolved Two-Dimensional Small Angle X-ray Scattering Studies of Oriented Poly(ethylene terephthalate) (PET) Using Paracrystalline Modeling Techniques RJ Rule, DH MacKerron, A Mahendrasingam, C Martin, TMW Nye Macromolecules 28 (25), 8517--8522, 1995 | 21 | 1995 |
| Bayesian modelling of compositional heterogeneity in molecular phylogenetics SE Heaps, TMW Nye, RJ Boys, TA Williams, TM Embley Statistical Applications in Genetics and Molecular Biology 13 (5), 589-609, 2014 | 19 | 2014 |
| Probabilistic distances between trees MK Garba, TMW Nye, RJ Boys Systematic Biology 67 (2), 320-327, 2018 | 18 | 2018 |
| Statistics on stratified spaces A Feragen, T Nye Riemannian geometric statistics in medical image analysis, 299-342, 2020 | 15 | 2020 |
| The effect of nonreversibility on inferring rooted phylogenies S Cherlin, SE Heaps, TMW Nye, RJ Boys, TA Williams, TM Embley Molecular Biology and Evolution 35 (4), 984-1002, 2018 | 15 | 2018 |
| Diffusion on some simple stratified spaces TMW Nye, MC White Journal of mathematical imaging and vision 50, 115-125, 2014 | 11 | 2014 |
| Predicting the strongest domain-domain contact in interacting protein pairs TMW Nye, C Berzuini, WR Gilks, MM Babu, S Teichmann Statistical Applications in Genetics and Molecular Biology 5 (1), 2006 | 8 | 2006 |
