Követés
Alexey Savelyev
Cím
Hivatkozott rá
Hivatkozott rá
Év
Chemically accurate coarse graining of double-stranded DNA
A Savelyev, GA Papoian
Proceedings of the National Academy of Sciences 107 (47), 20340-20345, 2010
1902010
Electrostatic, steric, and hydration interactions favor Na+ condensation around DNA compared with K+
A Savelyev, GA Papoian
Journal of the American Chemical Society 128 (45), 14506-14518, 2006
1702006
All‐atom polarizable force field for DNA based on the classical drude oscillator model
A Savelyev, AD MacKerell Jr
Journal of computational chemistry 35 (16), 1219-1239, 2014
1612014
Recent successes in coarse‐grained modeling of DNA
DA Potoyan, A Savelyev, GA Papoian
Wiley Interdisciplinary Reviews: Computational Molecular Science 3 (1), 69-83, 2013
1162013
Molecular renormalization group coarse-graining of polymer chains: application to double-stranded DNA
A Savelyev, GA Papoian
Biophysical Journal 96 (10), 4044-4052, 2009
992009
Counterion atmosphere and hydration patterns near a nucleosome core particle
CK Materese, A Savelyev, GA Papoian
Journal of the American Chemical Society 131 (41), 15005-15013, 2009
982009
Molecular renormalization group coarse-graining of electrolyte solutions: Application to aqueous NaCl and KCl
A Savelyev, GA Papoian
The Journal of Physical Chemistry B 113 (22), 7785-7793, 2009
942009
Competition among Li+, Na+, K+, and Rb+ Monovalent Ions for DNA in Molecular Dynamics Simulations Using the Additive CHARMM36 and Drude Polarizable …
A Savelyev, AD MacKerell Jr
The Journal of Physical Chemistry B 119 (12), 4428-4440, 2015
922015
Balancing the interactions of ions, water, and DNA in the Drude polarizable force field
A Savelyev, AD MacKerell Jr
The Journal of Physical Chemistry B 118 (24), 6742-6757, 2014
832014
Do monovalent mobile ions affect DNA's flexibility at high salt content?
A Savelyev
Physical Chemistry Chemical Physics 14 (7), 2250-2254, 2012
822012
Inter-DNA electrostatics from explicit solvent molecular dynamics simulations
A Savelyev, GA Papoian
Journal of the American Chemical Society 129 (19), 6060-6061, 2007
802007
Is DNA’s rigidity dominated by electrostatic or nonelectrostatic interactions?
A Savelyev, CK Materese, GA Papoian
Journal of the American Chemical Society 133 (48), 19290-19293, 2011
752011
Induced polarization influences the fundamental forces in DNA base flipping
JA Lemkul, A Savelyev, AD MacKerell Jr
The journal of physical chemistry letters 5 (12), 2077-2083, 2014
702014
Differential Impact of the Monovalent Ions Li+, Na+, K+, and Rb+ on DNA Conformational Properties
A Savelyev, AD MacKerell Jr
The journal of physical chemistry letters 6 (1), 212-216, 2015
572015
Differential Deformability of the DNA Minor Groove and Altered BI/BII Backbone Conformational Equilibrium by the Monovalent Ions Li+, Na+, K+, and Rb+ via …
A Savelyev, AD MacKerell Jr
Journal of chemical theory and computation 11 (9), 4473-4485, 2015
332015
Polyionic charge density plays a key role in differential recognition of mobile ions by biopolymers
A Savelyev, GA Papoian
The Journal of Physical Chemistry B 112 (30), 9135-9145, 2008
292008
GenApp: Extensible tool for rapid generation of web and native GUI applications
A Savelyev, E Brookes
Future Generation Computer Systems 94, 929-936, 2019
242019
Moving analytical ultracentrifugation software to a good manufacturing practices (GMP) environment
A Savelyev, GE Gorbet, A Henrickson, B Demeler
PLoS computational biology 16 (6), e1007942, 2020
222020
Wiley Interdiscip
DA Potoyan, A Savelyev, GA Papoian
Rev.: Comput. Mol. Sci 3, 69-83, 2013
182013
Multi-wavelength analytical ultracentrifugation of biopolymer mixtures and interactions
A Henrickson, GE Gorbet, A Savelyev, M Kim, J Hargreaves, SK Schultz, ...
Analytical biochemistry 652, 114728, 2022
122022
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