| SUPPA2: fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions JL Trincado, JC Entizne, G Hysenaj, B Singh, M Skalic, DJ Elliott, E Eyras Genome biology 19, 1-11, 2018 | 430 | 2018 |
| Leveraging transcript quantification for fast computation of alternative splicing profiles GP Alamancos, A Pagès, JL Trincado, N Bellora, E Eyras Rna 21 (9), 1521-1531, 2015 | 227 | 2015 |
| A single-cell tumor immune atlas for precision oncology P Nieto, M Elosua-Bayes, JL Trincado, D Marchese, R Massoni-Badosa, ... Genome research 31 (10), 1913-1926, 2021 | 102 | 2021 |
| Immune cell profiling of the cerebrospinal fluid enables the characterization of the brain metastasis microenvironment C Rubio-Perez, E Planas-Rigol, JL Trincado, E Bonfill-Teixidor, A Arias, ... Nature communications 12 (1), 1503, 2021 | 50 | 2021 |
| The prognostic potential of alternative transcript isoforms across human tumors JL Trincado, E Sebestyen, A Pages, E Eyras Genome medicine 8, 1-14, 2016 | 50 | 2016 |
| Genome sequencing and RNA-motif analysis reveal novel damaging noncoding mutations in human tumors B Singh, JL Trincado, PJ Tatlow, SR Piccolo, E Eyras Molecular Cancer Research 16 (7), 1112-1124, 2018 | 23 | 2018 |
| Impaired condensin complex and Aurora B kinase underlie mitotic and chromosomal defects in hyperdiploid B-cell ALL O Molina, M Vinyoles, I Granada, H Roca-Ho, F Gutierrez-Agüera, ... Blood, The Journal of the American Society of Hematology 136 (3), 313-327, 2020 | 22 | 2020 |
| CD34+CD19−CD22+ B-cell progenitors may underlie phenotypic escape in patients treated with CD19-directed therapies C Bueno, S Barrera, A Bataller, V Ortiz-Maldonado, N Elliot, S O’Byrne, ... Blood, The Journal of the American Society of Hematology 140 (1), 38-44, 2022 | 21 | 2022 |
| SUPPA: a super-fast pipeline for alternative splicing analysis from RNA-Seq GP Alamancos, A Pagès, JL Trincado, N Bellora, E Eyras bioRxiv, 008763, 2014 | 10 | 2014 |
| HDAC7 is a major contributor in the pathogenesis of infant t (4; 11) proB acute lymphoblastic leukemia O de Barrios, A Galaras, JL Trincado, A Azagra, O Collazo, A Meler, ... Leukemia 35 (7), 2086-2091, 2021 | 9 | 2021 |
| SUPPA2 provides fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions JL Trincado, JC Entizne, G Hysenaj, B Singh, M Skalic, DJ Elliott, E Eyras Genome Biol 19, 40, 2017 | 7 | 2017 |
| Clonal heterogeneity and rates of specific chromosome gains are risk predictors in childhood high‐hyperdiploid B‐cell acute lymphoblastic leukemia M Ramos‐Muntada, JL Trincado, J Blanco, C Bueno, ... Molecular Oncology 16 (16), 2899-2919, 2022 | 6 | 2022 |
| ISOTOPE: ISOform-guided prediction of epiTOPEs in cancer JL Trincado, M Reixachs-Sole, J Pérez-Granado, T Fugmann, F Sanz, ... PLoS Computational Biology 17 (9), e1009411, 2021 | 6 | 2021 |
| Fast and accurate differential splicing analysis across multiple conditions with replicates JC Entizne, JL Trincado, G Hysenaj, B Singh, M Skalic, DJ Elliott, E Eyras bioRxiv, 086876, 2016 | 3 | 2016 |
| GPRC5C drives branched-chain amino acid metabolism in leukemogenesis YW Zhang, T Velasco-Hernandez, J Mess, ME Lalioti, MC Romero-Mulero, ... Blood Advances 7 (24), 7525-7538, 2023 | 2 | 2023 |
| β‐Catenin activity induces an RNA biosynthesis program promoting therapy resistance in T‐cell acute lymphoblastic leukemia V García‐Hernández, D Arambilet, Y Guillén, T Lobo‐Jarne, M Maqueda, ... EMBO Molecular Medicine 15 (2), e16554, 2023 | 2 | 2023 |
| Integrative single‐cell expression and functional studies unravels a sensitization to cytarabine‐based chemotherapy through HIF pathway inhibition in AML leukemia stem cells T Velasco‐Hernandez, JL Trincado, M Vinyoles, A Closa, ... HemaSphere 8 (2), e45, 2024 | 1 | 2024 |
| Formation of an invasion-permissive matrix requires TGFβ/SNAIL1-regulated alternative splicing of fibronectin H Franco-Valls, E Tusquets-Uxó, L Sala, M Val, R Peña, A Iaconcig, ... Breast Cancer Research 25 (1), 143, 2023 | 1 | 2023 |
| Converging and evolving immuno-genomic routes toward immune escape in breast cancer J Blanco-Heredia, CA Souza, JL Trincado, M Gonzalez-Cao, ... Nature Communications 15 (1), 1302, 2024 | | 2024 |
| Chromosomal instability in aneuploid acute lymphoblastic leukemia associates with disease progression O Molina, C Ortega-Sabater, N Thampi, N Fernández-Fuentes, ... EMBO Molecular Medicine 16 (1), 64-92, 2024 | | 2024 |
Eduardo EyrasEMBL Australia Group Leader, Professor - Australian National UniversityVerified email at anu.edu.au
