Namita T Gupta
Hivatkozott rá
Hivatkozott rá
Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data
NT Gupta, JA Vander Heiden, M Uduman, D Gadala-Maria, G Yaari, ...
Bioinformatics 31 (20), 3356-3358, 2015
Models of somatic hypermutation targeting and substitution based on synonymous mutations from high-throughput immunoglobulin sequencing data
G Yaari, JA Vander Heiden, M Uduman, D Gadala-Maria, N Gupta, ...
Frontiers in immunology 4, 2013
Salmonella infection drives promiscuous B cell activation followed by extrafollicular affinity maturation
R Di Niro, SJ Lee, JA Vander Heiden, RA Elsner, N Trivedi, JM Bannock, ...
Immunity 43 (1), 120-131, 2015
Interleukin-10 from CD4+ follicular regulatory T cells promotes the germinal center response
BJ Laidlaw, Y Lu, RA Amezquita, JS Weinstein, JA Vander Heiden, ...
Sci Immunol 2 (16), eaan4767, 2017
Hierarchical Clustering Can Identify B Cell Clones with High Confidence in Ig Repertoire Sequencing Data
NT Gupta, KD Adams, AW Briggs, SC Timberlake, F Vigneault, ...
The Journal of Immunology 198 (6), 2489-2499, 2017
Neutralizing antibodies against West Nile virus identified directly from human B cells by single-cell analysis and next generation sequencing
K Tsioris, NT Gupta, AO Ogunniyi, RM Zimnisky, F Qian, Y Yao, X Wang, ...
Integrative Biology 7 (12), 1587-1597, 2015
Responsive population dynamics and wide seeding into the duodenal lamina propria of transglutaminase-2-specific plasma cells in celiac disease
R Di Niro, O Snir, K Kaukinen, G Yaari, KEA Lundin, NT Gupta, ...
Mucosal immunology 9 (1), 254-264, 2016
Neoadjuvant cemiplimab for resectable hepatocellular carcinoma: a single-arm, open-label, phase 2 trial
TU Marron, MI Fiel, P Hamon, N Fiaschi, E Kim, SC Ward, Z Zhao, J Kim, ...
The Lancet Gastroenterology & Hepatology 7 (3), 219-229, 2022
A framework for highly multiplexed dextramer mapping and prediction of T cell receptor sequences to antigen specificity
W Zhang, PG Hawkins, J He, NT Gupta, J Liu, G Choonoo, SW Jeong, ...
Science Advances 7 (20), eabf5835, 2021
Endogenous retroviral proteins provide an immunodominant but not requisite antigen in a murine immunotherapy tumor model
X Ye, JC Waite, A Dhanik, N Gupta, M Zhong, C Adler, E Malahias, M Ni, ...
Oncoimmunology 9 (1), 1758602, 2020
VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements
IT Toby, MK Levin, EA Salinas, S Christley, S Bhattacharya, F Breden, ...
BMC bioinformatics 17 (13), 5-14, 2016
Graded vector representations of immunoglobulins produced in response to west Nile virus
T Cohen, D Widdows, JAV Heiden, NT Gupta, SH Kleinstein
International Symposium on Quantum Interaction, 135-148, 2016
Absence of central tolerance in Aire-deficient mice synergizes with immune-checkpoint inhibition to enhance antitumor responses
AA Benitez, S Khalil-Agüero, A Nandakumar, NT Gupta, W Zhang, ...
Communications biology 3 (1), 1-13, 2020
Systems and Methods for Sequencing T Cell Receptors and Uses Thereof
W Zhang, B Wang, N Gupta
US Patent App. 17/591,355, 2022
Systems and methods for sequencing T cell receptors and uses thereof
W Zhang, B Wang, N Gupta
US Patent 11,274,342, 2022
Intratumoral mregDC and CXCL13 T helper niches enable local differentiation of CD8 T cells following PD-1 blockade
A Magen, P Hamon, N Fiaschi, L Troncoso, E Humblin, D D’souza, ...
bioRxiv, 2022
Methods and systems for analysis of receptor interaction
W Zhang, J He, N Gupta, GS Atwal, P Hawkins
US Patent App. 17/236,998, 2021
Shazam: Tuning clonal assignment thresholds with nearest neighbor distances
N Gupta, S Marquez, N Nouri, JQ Zhou
Package ‘scoper’
N Nouri, SH Kleinstein, NT Gupta
Absence of central tolerance as a sculpting mechanism of immune-checkpoint therapy.
AA Benitez, S Khalil-Aguero, A Nandakumar, N Gupta, W Zhang, ...
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Cikkek 1–20