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John H Morris
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STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ...
Nucleic acids research 47 (D1), D607-D613, 2019
141402019
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
D Szklarczyk, JH Morris, H Cook, M Kuhn, S Wyder, M Simonovic, ...
Nucleic acids research, gkw937, 2016
68562016
UCSF ChimeraX: Structure visualization for researchers, educators, and developers
EF Pettersen, TD Goddard, CC Huang, EC Meng, GS Couch, TI Croll, ...
Protein science 30 (1), 70-82, 2021
47972021
UCSF ChimeraX: Meeting modern challenges in visualization and analysis
TD Goddard, CC Huang, EC Meng, EF Pettersen, GS Couch, JH Morris, ...
Protein science 27 (1), 14-25, 2018
34672018
Integration of biological networks and gene expression data using Cytoscape
MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ...
Nature protocols 2 (10), 2366-2382, 2007
27312007
Genetic meta-analysis of diagnosed Alzheimer’s disease identifies new risk loci and implicates Aβ, tau, immunity and lipid processing
BW Kunkle, B Grenier-Boley, R Sims, JC Bis, V Damotte, AC Naj, ...
Nature genetics 51 (3), 414-430, 2019
22122019
Cytoscape StringApp: network analysis and visualization of proteomics data
NT Doncheva, JH Morris, J Gorodkin, LJ Jensen
Journal of proteome research 18 (2), 623-632, 2018
14802018
Cytoscape automation: empowering workflow-based network analysis
D Otasek, JH Morris, J Boušas, AR Pico, B Demchak
Genome biology 20, 1-15, 2019
10602019
Biological network exploration with Cytoscape 3
G Su, JH Morris, B Demchak, GD Bader
Current protocols in bioinformatics 47 (1), 8.13. 1-8.13. 24, 2014
9412014
Global landscape of HIV–human protein complexes
S Jaeger, P Cimermancic, N Gulbahce, JR Johnson, KE McGovern, ...
Nature 481 (7381), 365-370, 2012
7882012
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
JH Morris, L Apeltsin, AM Newman, J Baumbach, T Wittkop, G Su, ...
BMC bioinformatics 12, 1-14, 2011
6032011
Effects of dronabinol on anorexia and disturbed behavior in patients with Alzheimer's disease
L Volicer, M Stelly, J Morris, J McLAUGHLIN, BJ Volicer
International journal of geriatric psychiatry 12 (9), 913-919, 1997
4711997
Using sequence similarity networks for visualization of relationships across diverse protein superfamilies
HJ Atkinson, JH Morris, TE Ferrin, PC Babbitt
PloS one 4 (2), e4345, 2009
4662009
GLay: community structure analysis of biological networks
G Su, A Kuchinsky, JH Morris, DJ States, F Meng
Bioinformatics 26 (24), 3135-3137, 2010
2692010
Randomized, double-blind, Phase 1 trial of an alphavirus replicon vaccine for cytomegalovirus in CMV seronegative adult volunteers
DI Bernstein, EA Reap, K Katen, A Watson, K Smith, P Norberg, ...
Vaccine 28 (2), 484-493, 2009
2532009
The structure–function linkage database
E Akiva, S Brown, DE Almonacid, AE Barber 2nd, AF Custer, MA Hicks, ...
Nucleic acids research 42 (D1), D521-D530, 2014
2452014
UCSF ChimeraX: Tools for structure building and analysis
EC Meng, TD Goddard, EF Pettersen, GS Couch, ZJ Pearson, JH Morris, ...
Protein Science 32 (11), e4792, 2023
2252023
Affinity purification–mass spectrometry and network analysis to understand protein-protein interactions
JH Morris, GM Knudsen, E Verschueren, JR Johnson, P Cimermancic, ...
Nature protocols 9 (11), 2539-2554, 2014
2142014
Leveraging enzyme structure− function relationships for functional inference and experimental design: the structure− function linkage database
SCH Pegg, SD Brown, S Ojha, J Seffernick, EC Meng, JH Morris, ...
Biochemistry 45 (8), 2545-2555, 2006
1962006
Cytokine profile and prognostic significance of high neutrophil-lymphocyte ratio in colorectal cancer
ZY Chen, K Raghav, CH Lieu, ZQ Jiang, C Eng, JN Vauthey, GJ Chang, ...
British journal of cancer 112 (6), 1088-1097, 2015
1752015
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