Követés
Mile Sikic
Mile Sikic
University of Zagreb, Faculty of Electrical Engineering and Computing
E-mail megerősítve itt: fer.hr - Kezdőlap
Cím
Hivatkozott rá
Hivatkozott rá
Év
Fast and accurate de novo genome assembly from long uncorrected reads
R Vaser, I Sović, N Nagarajan, M ©ikić
Genome research 27 (5), 737-746, 2017
11622017
SIFT missense predictions for genomes
R Vaser, S Adusumalli, SN Leng, M Sikic, PC Ng
Nature protocols 11 (1), 1-9, 2016
7572016
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
I Sović, M ©ikić, A Wilm, SN Fenlon, S Chen, N Nagarajan
Nature communications 7 (1), 1-11, 2016
3222016
Metals in proteins: correlation between the metal-ion type, coordination number and the amino-acid residues involved in the coordination
I Dokmanić, M ©ikić, S Tomić
Acta Crystallographica Section D: Biological Crystallography 64 (3), 257-263, 2008
2172008
Prediction of protein–protein interaction sites in sequences and 3D structures by random forests
M ©ikić, S Tomić, K Vlahoviček
PLoS computational biology 5 (1), e1000278, 2009
1822009
PSAIA–protein structure and interaction analyzer
J Mihel, M ©ikić, S Tomić, B Jeren, K Vlahoviček
BMC structural biology 8 (1), 1-11, 2008
1702008
Edlib: a C/C++ library for fast, exact sequence alignment using edit distance
M ©oąić, M ©ikić
Bioinformatics 33 (9), 1394-1395, 2017
1492017
Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes
D Bertrand, J Shaw, M Kalathiyappan, AHQ Ng, MS Kumar, C Li, ...
Nature biotechnology 37 (8), 937-944, 2019
1152019
Large-scale functional organization of long-range chromatin interaction networks
KS Sandhu, G Li, HM Poh, YLK Quek, YY Sia, SQ Peh, FH Mulawadi, ...
Cell reports 2 (5), 1207-1219, 2012
1082012
Identification of patient zero in static and temporal networks: Robustness and limitations
N Antulov-Fantulin, A Lančić, T ©muc, H ©tefančić, M ©ikić
Physical review letters 114 (24), 248701, 2015
882015
SW#–GPU-enabled exact alignments on genome scale
M Korpar, M ©ikić
Bioinformatics 29 (19), 2494–2495, 2013
652013
Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads
I Sović, K Kriľanović, K Skala, M ©ikić
Bioinformatics 32 (17), 2582-2589, 2016
572016
Evaluation of tools for long read RNA-seq splice-aware alignment
K Kriľanović, A Echchiki, J Roux, M ©ikić
Bioinformatics 34 (5), 748-754, 2018
522018
Epidemic centrality-is there an underestimated epidemic impact of network peripheral nodes?
M Sikic, A Lancic, N Antulov-Fantulin, H Stefancic
The European Physical Journal B 86 (10), 2013
512013
BioMe: biologically relevant metals
A Tus, A Rakipović, G Peretin, S Tomić, M ©ikić
Nucleic acids research 40 (W1), W352-W357, 2012
312012
Time-and memory-efficient genome assembly with Raven
R Vaser, M ©ikić
Nature Computational Science 1 (5), 332-336, 2021
292021
Statistical inference framework for source detection of contagion processes on arbitrary network structures
N Antulov-Fantulin, A Lancic, H Stefancic, M Sikic, T Smuc
2014 IEEE Eighth International Conference on Self-Adaptive and Self …, 2014
292014
Raven: a de novo genome assembler for long reads
R Vaser, M ©ikić
BioRxiv, 2020.08. 07.242461, 2021
272021
FastSIR algorithm: A fast algorithm for the simulation of the epidemic spread in large networks by using the susceptible–infected–recovered compartment model
N Antulov-Fantulin, A Lančić, H ©tefančić, M ©ikić
Information sciences 239, 226-240, 2013
26*2013
SWORD-a highly efficient protein database search
R Vaser, D Pavlović, M Korpar, M ©ikić
Bioinformatics 32 (17), i680-i684, 2015
222015
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