Gary Benson
Gary Benson
Associate Professor, Computer Science, Bioinformatics, Biology, Boston University
Verified email at - Homepage
Cited by
Cited by
Tandem repeats finder: a program to analyze DNA sequences
G Benson
Nucleic acids research 27 (2), 573-580, 1999
A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis
P Le Flèche, Y Hauck, L Onteniente, A Prieur, F Denoeud, V Ramisse, ...
BMC microbiology 1, 1-14, 2001
Replication and compartmentalization of HIV-1 in kidney epithelium of patients with HIV-associated nephropathy
D Marras, LA Bruggeman, F Gao, N Tanji, MM Mansukhani, A Cara, ...
Nature medicine 8 (5), 522-526, 2002
Inverted repeat structure of the human genome: the X-chromosome contains a preponderance of large, highly homologous inverted repeats that contain testes genes
PE Warburton, J Giordano, F Cheung, Y Gelfand, G Benson
Genome research 14 (10a), 1861-1869, 2004
Let sleeping files lie: Pattern matching in Z-compressed files
A Amir, G Benson, M Farach
Journal of Computer and System Sciences 52 (2), 299-307, 1996
Efficient two-dimensional compressed matching
A Amir, C Benson
1992 Data Compression Conference, 279,280,281,282,283,284,285,286,287,288 …, 1992
TRDB—the tandem repeats database
Y Gelfand, A Rodriguez, G Benson
Nucleic acids research 35 (suppl_1), D80-D87, 2007
Lecture notes in computer science (including subseries lecture notes in artificial intelligence and lecture notes in bioinformatics): Preface
M Abe, K Aoki, G Ateniese, R Avanzi, Z Beerliová, O Billet, A Biryukov, ...
Lecture Notes in Computer Science (including subseries Lecture Notes in …, 2006
GlycReSoft: a software package for automated recognition of glycans from LC/MS data
E Maxwell, Y Tan, Y Tan, H Hu, G Benson, K Aizikov, S Conley, ...
Public Library of Science 7 (9), e45474, 2012
Two-dimensional periodicity and its applications
A Amir, G Benson
Proceedings of the third annual ACM-SIAM symposium on Discrete algorithms …, 1992
Evolutionary history of mammalian transposons determined by genome-wide defragmentation
J Giordano, Y Ge, Y Gelfand, G Abrusán, G Benson, PE Warburton
PLoS computational biology 3 (7), e137, 2007
A method for fast database search for all k-nucleotide repeats
G Benson, MS Waterman
Nucleic Acids Research 22 (22), 4828-4836, 1994
Reconstructing the duplication history of a tandem repeat.
G Benson, L Dong
ISMB, 44-53, 1999
Tandem repeats over the edit distance
D Sokol, G Benson, J Tojeira
Bioinformatics 23 (2), e30-e35, 2007
An alphabet independent approach to two-dimensional pattern matching
A Amir, G Benson, M Farach
SIAM Journal on Computing 23 (2), 313-323, 1994
Sequence alignment with tandem duplication
G Benson
Proceedings of the first annual international conference on Computational …, 1997
Mutations in the hepatitis C virus core gene are associated with advanced liver disease and hepatocellular carcinoma
SL Fishman, SH Factor, C Balestrieri, X Fan, AM DiBisceglie, SM Desai, ...
Clinical Cancer Research 15 (9), 3205-3213, 2009
Mutation Master: profiles of substitutions in hepatitis C virus RNA of the core, alternate reading frame, and NS2 coding regions
JL Walewski, JA Gutierrez, W Branch-Elliman, DD Stump, TR Keller, ...
Rna 8 (5), 557-571, 2002
Alphabet independent two dimensional matching
A Amir, G Benson, M Farach
Proceedings of the twenty-fourth annual ACM symposium on Theory of Computing …, 1992
Whole genome sequences of a male and female supercentenarian, ages greater than 114 years
P Sebastiani, A Riva, M Montano, P Pham, A Torkamani, E Scherba, ...
Frontiers in genetics 2, 90, 2012
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