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Tim Dallman
Tim Dallman
Verified email at uu.nl
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Performance comparison of benchtop high-throughput sequencing platforms
NJ Loman, RV Misra, TJ Dallman, C Constantinidou, SE Gharbia, J Wain, ...
Nature biotechnology 30 (5), 434-439, 2012
17702012
The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity
Z Zhou, NF Alikhan, K Mohamed, Y Fan, M Achtman, D Brown, ...
Genome research 30 (1), 138-152, 2020
7222020
Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes
A Moura, A Criscuolo, H Pouseele, MM Maury, A Leclercq, C Tarr, ...
Nature microbiology 2 (2), 1-10, 2016
6212016
Emergence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Clone Harboring a Promiscuous Plasmid Encoding Resistance to …
EJ Klemm, S Shakoor, AJ Page, FN Qamar, K Judge, DK Saeed, ...
MBio 9 (1), 10.1128/mbio. 00105-18, 2018
5792018
MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
PM Ashton, S Nair, T Dallman, S Rubino, W Rabsch, S Mwaigwisya, ...
Nature biotechnology 33 (3), 296-300, 2015
5462015
The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution
LH Greene, TE Lewis, S Addou, A Cuff, T Dallman, M Dibley, O Redfern, ...
Nucleic acids research 35 (suppl_1), D291-D297, 2007
3552007
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis
F Pearl, A Todd, I Sillitoe, M Dibley, O Redfern, T Lewis, C Bennett, ...
Nucleic acids research 33 (suppl_1), D247-D251, 2005
3472005
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
J Quick, P Ashton, S Calus, C Chatt, S Gossain, J Hawker, S Nair, K Neal, ...
Genome biology 16, 1-14, 2015
3372015
Detection of the plasmid-mediated mcr-1 gene conferring colistin resistance in human and food isolates of Salmonella enterica and Escherichia coli in England …
M Doumith, G Godbole, P Ashton, L Larkin, T Dallman, M Day, M Day, ...
Journal of Antimicrobial Chemotherapy 71 (8), 2300-2305, 2016
3082016
Rotavirus genotypes co-circulating in Europe between 2006 and 2009 as determined by EuroRotaNet, a pan-European collaborative strain surveillance network
MIGO MARA, T Dallman, KBA NYAI, BBO TTIGER, J Buesa, S Diedrich, ...
2762010
Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study
KS Baker, TJ Dallman, PM Ashton, M Day, G Hughes, PD Crook, ...
The Lancet infectious diseases 15 (8), 913-921, 2015
2692015
Identification of Salmonella for public health surveillance using whole genome sequencing
PM Ashton, S Nair, TM Peters, JA Bale, DG Powell, A Painset, R Tewolde, ...
PeerJ 4, e1752, 2016
2532016
Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings
NA Feasey, J Hadfield, KH Keddy, TJ Dallman, J Jacobs, X Deng, ...
Nature genetics 48 (10), 1211-1217, 2016
2002016
Whole-Genome Sequencing for National Surveillance of Shiga Toxin–Producing Escherichia coli O157
TJ Dallman, L Byrne, PM Ashton, LA Cowley, NT Perry, G Adak, ...
Clinical Infectious Diseases 61 (3), 305-312, 2015
1982015
Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak
ME Pearce, NF Alikhan, TJ Dallman, Z Zhou, K Grant, MCJ Maiden
International journal of food microbiology 274, 1-11, 2018
1922018
SnapperDB: a database solution for routine sequencing analysis of bacterial isolates
T Dallman, P Ashton, U Schafer, A Jironkin, A Painset, S Shaaban, ...
Bioinformatics 34 (17), 3028-3029, 2018
1892018
Prediction of Phenotypic Antimicrobial Resistance Profiles From Whole Genome Sequences of Non-typhoidal Salmonella enterica
S Neuert, S Nair, MR Day, M Doumith, PM Ashton, KC Mellor, C Jenkins, ...
Frontiers in microbiology 9, 592, 2018
1752018
Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species
KS Baker, TJ Dallman, N Field, T Childs, H Mitchell, M Day, FX Weill, ...
Nature communications 9 (1), 1462, 2018
1612018
Rotavirus surveillance in Europe, 2005–2008: web-enabled reporting and real-time analysis of genotyping and epidemiological data
M Iturriza-Gómara, T Dallman, K Bányai, B Böttiger, J Buesa, S Diedrich, ...
Journal of Infectious Diseases 200 (Supplement 1), S215, 2009
1502009
Prospective use of whole genome sequencing (WGS) detected a multi-country outbreak of Salmonella Enteritidis
T Inns, PM Ashton, S Herrera-Leon, J Lighthill, S Foulkes, T Jombart, ...
Epidemiology & Infection 145 (2), 289-298, 2017
1382017
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