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Human BioMolecular Atlas Program (HuBMAP)
Human BioMolecular Atlas Program (HuBMAP)
https://commonfund.nih.gov/HuBMAP
Verified email at Pitt.edu - Homepage
Title
Cited by
Cited by
Year
Comprehensive integration of single-cell data
T Stuart, A Butler, P Hoffman, C Hafemeister, E Papalexi, WM Mauck, ...
cell 177 (7), 1888-1902. e21, 2019
101972019
Integrated analysis of multimodal single-cell data
Y Hao, S Hao, E Andersen-Nissen, WM Mauck, S Zheng, A Butler, MJ Lee, ...
Cell 184 (13), 3573-3587. e29, 2021
64102021
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
C Hafemeister, R Satija
Genome biology 20 (1), 296, 2019
26972019
The single-cell transcriptional landscape of mammalian organogenesis
J Cao, M Spielmann, X Qiu, X Huang, DM Ibrahim, AJ Hill, F Zhang, ...
Nature 566 (7745), 496-502, 2019
24262019
Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution
SG Rodriques, RR Stickels, A Goeva, CA Martin, E Murray, ...
Science 363 (6434), 1463-1467, 2019
15502019
Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH+
CHL Eng, M Lawson, Q Zhu, R Dries, N Koulena, Y Takei, J Yun, ...
Nature 568 (7751), 235-239, 2019
12592019
Ferroptosis turns 10: Emerging mechanisms, physiological functions, and therapeutic applications
BR Stockwell
Cell 185 (14), 2401-2421, 2022
8002022
Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics
M Stoeckius, S Zheng, B Houck-Loomis, S Hao, BZ Yeung, WM Mauck, ...
Genome biology 19, 1-12, 2018
7662018
Multimodal analysis of composition and spatial architecture in human squamous cell carcinoma
AL Ji, AJ Rubin, K Thrane, S Jiang, DL Reynolds, RM Meyers, MG Guo, ...
Cell 182 (2), 497-514. e22, 2020
6082020
Single-cell chromatin state analysis with Signac
T Stuart, A Srivastava, S Madad, CA Lareau, R Satija
Nature methods 18 (11), 1333-1341, 2021
6042021
High-throughput sequencing of the transcriptome and chromatin accessibility in the same cell
S Chen, BB Lake, K Zhang
Nature biotechnology 37 (12), 1452-1457, 2019
5902019
Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive front
CM Schürch, SS Bhate, GL Barlow, DJ Phillips, L Noti, I Zlobec, P Chu, ...
Cell 182 (5), 1341-1359. e19, 2020
5472020
High-spatial-resolution multi-omics sequencing via deterministic barcoding in tissue
Y Liu, M Yang, Y Deng, G Su, A Enninful, CC Guo, T Tebaldi, D Zhang, ...
Cell 183 (6), 1665-1681. e18, 2020
4712020
Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices
S Alseekh, A Aharoni, Y Brotman, K Contrepois, J D’Auria, J Ewald, ...
Nature methods 18 (7), 747-756, 2021
4452021
Giotto: a toolbox for integrative analysis and visualization of spatial expression data
R Dries, Q Zhu, R Dong, CHL Eng, H Li, K Liu, Y Fu, T Zhao, A Sarkar, ...
Genome biology 22, 1-31, 2021
4272021
Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning
NF Greenwald, G Miller, E Moen, A Kong, A Kagel, T Dougherty, ...
Nature biotechnology 40 (4), 555-565, 2022
3882022
Supervised classification enables rapid annotation of cell atlases
HA Pliner, J Shendure, C Trapnell
Nature methods 16 (10), 983-986, 2019
3762019
Foundation models for generalist medical artificial intelligence
M Moor, O Banerjee, ZSH Abad, HM Krumholz, J Leskovec, EJ Topol, ...
Nature 616 (7956), 259-265, 2023
3742023
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes
K Shafin, T Pesout, R Lorig-Roach, M Haukness, HE Olsen, C Bosworth, ...
Nature biotechnology 38 (9), 1044-1053, 2020
3732020
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program
Caltech-UW TMC Cai Long lcai@ caltech. edu 21 b Shendure Jay 9 Trapnell Cole ...
Nature 574 (7777), 187-192, 2019
3692019
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Articles 1–20