Letif Mones
Title
Cited by
Cited by
Year
On the divalent metal ion dependence of DNA cleavage by restriction endonucleases of the EcoRI family
V Pingoud, W Wende, P Friedhoff, M Reuter, J Alves, A Jeltsch, L Mones, ...
Journal of molecular biology 393 (1), 140-160, 2009
542009
The adaptive buffered force QM/MM method in the CP2K and AMBER software packages
L Mones, A Jones, AW Götz, T Laino, RC Walker, B Leimkuhler, G Csányi, ...
Journal of computational chemistry 36 (9), 633-648, 2015
452015
Exploration, sampling, and reconstruction of free energy surfaces with Gaussian process regression
L Mones, N Bernstein, G Csányi
Journal of chemical theory and computation 12 (10), 5100-5110, 2016
392016
The energy gap as a universal reaction coordinate for the simulation of chemical reactions
L Mones, P Kulhánek, I Simon, A Laio, M Fuxreiter
The Journal of Physical Chemistry B 113 (22), 7867-7873, 2009
372009
Tests of an adaptive QM/MM calculation on free energy profiles of chemical reactions in solution
C Varnai, N Bernstein, L Mones, G Csanyi
The Journal of Physical Chemistry B 117 (40), 12202-12211, 2013
282013
Probing the two-metal ion mechanism in the restriction endonuclease BamHI
L Mones, P Kulhánek, J Florián, I Simon, M Fuxreiter
Biochemistry 46 (50), 14514-14523, 2007
252007
A universal preconditioner for simulating condensed phase materials
D Packwood, J Kermode, L Mones, N Bernstein, J Woolley, N Gould, ...
The Journal of Chemical Physics 144 (16), 164109, 2016
212016
A new electron-methanol molecule pseudopotential and its application for the solvated electron in methanol
L Mones, L Turi
The Journal of chemical physics 132 (15), 154507, 2010
212010
Optimization of reorganization energy drives evolution of the designed Kemp eliminase KE07
A Lábas, E Szabo, L Mones, M Fuxreiter
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1834 (5), 908-917, 2013
202013
The role of reorganization energy in rational enzyme design
M Fuxreiter, L Mones
Current Opinion in Chemical Biology 21, 34-41, 2014
192014
Metal-binding sites at the active site of restriction endonuclease BamHI can conform to a one-ion mechanism
L Mones, I Simon, M Fuxreiter
Biological Chemistry 388 (1), 73-78, 2007
152007
Empirical valence bond simulations of the chemical mechanism of ATP to cAMP conversion by anthrax edema factor
L Mones, WJ Tang, J Florián
Biochemistry 52 (15), 2672-2682, 2013
132013
Topologically invariant reaction coordinates for simulating multistate chemical reactions
L Mones, G Csányi
The Journal of Physical Chemistry B 116 (51), 14876-14885, 2012
102012
Quantum-classical simulation of electron localization in negatively charged methanol clusters
L Mones, PJ Rossky, L Turi
The Journal of chemical physics 135 (8), 084501, 2011
102011
PMFLib–A TOOLKIT FOR FREE ENERGY CALCULATIONS
P Kulhánek, L Mones, Z Střelcová, I Simon, M Fuxreiter, J Koča
102011
Analysis of localization sites for an excess electron in neutral methanol clusters using approximate pseudopotential quantum-mechanical calculations
L Mones, PJ Rossky, L Turi
The Journal of chemical physics 133 (14), 144510, 2010
102010
Preconditioners for the geometry optimisation and saddle point search of molecular systems
L Mones, C Ortner, G Csányi
Scientific reports 8 (1), 1-11, 2018
82018
Meta-optimization of optimal power flow
M Jamei, L Mones, A Robson, L White, J Requeima, C Ududec
ICML, Climate Change: How Can AI Help, 2019
42019
Some remarks on preconditioning molecular dynamics
H AlRachid, L Mones, C Ortner
The SMAI journal of computational mathematics 4, 57-80, 2018
32018
Excess electrons in methanol clusters: Beyond the one-electron picture
G Pohl, L Mones, L Turi
The Journal of chemical physics 145 (16), 164313, 2016
32016
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Articles 1–20