Follow
Ching-Tai Chen
Ching-Tai Chen
Department of Bioinformatics and Medical Engineering, Asia University
Verified email at asia.edu.tw
Title
Cited by
Cited by
Year
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, DD Andrea, R Lepore, ...
Genome Biology 17 (184), 2016
4072016
Proteogenomics of Non-smoking Lung Cancer in East Asia Delineates Molecular Signatures of Pathogenesis and Progression
YJ Chen, TI Roumeliotis, YH Chang, CT Chen, CL Han, MH Lin, ...
Cell 182 (1), 226-244. e17, 2020
2052020
Rationalization and design of the complementarity determining region sequences in an antibody-antigen recognition interface
CM Yu, HP Peng, C Chen, YC Lee, JB Chen, KC Tsai, CT Chen, ...
PLoS One 7 (3), e33340, 2012
592012
N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding
T Pitti, CT Chen, HN Lin, WK Choong, WL Hsu, TY Sung
Scientific reports 9 (1), 15975, 2019
572019
Protein subcellular localization prediction of eukaryotes using a knowledge-based approach
HN Lin, CT Chen, TY Sung, SY Ho, WL Hsu
BMC bioinformatics 10, 1-13, 2009
562009
Protein-protein interaction site predictions with three-dimensional probability distributions of interacting atoms on protein surfaces
CT Chen, HP Peng, JW Jian, KC Tsai, JY Chang, EW Yang, JB Chen, ...
PloS one 7 (6), e37706, 2012
382012
MS2CNN: predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks
YM Lin, CT Chen, JM Chang
BMC genomics 20, 1-10, 2019
302019
Prediction of carbohydrate binding sites on protein surfaces with 3-dimensional probability density distributions of interacting atoms
KC Tsai, JW Jian, EW Yang, PC Hsu, HP Peng, CT Chen, JB Chen, ...
PloS one 7 (7), e40846, 2012
302012
iMet-Q: a user-friendly tool for label-free metabolomics quantitation using dynamic peak-width determination
HY Chang, CT Chen, TM Lih, KS Lynn, CG Juo, WL Hsu, TY Sung
PloS one 11 (1), e0146112, 2016
262016
Protease substrate site predictors derived from machine learning on multilevel substrate phage display data
CT Chen, EW Yang, HJ Hsu, YK Sun, WL Hsu, AS Yang
Bioinformatics 24 (23), 2691-2697, 2008
212008
MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification
TM Lih, WK Choong, CC Chen, CW Cheng, HN Lin, CT Chen, HY Chang, ...
Nucleic acids research 44 (W1), W575-W580, 2016
152016
Informatics view on the challenges of identifying missing proteins from shotgun proteomics
WK Choong, HY Chang, CT Chen, CF Tsai, WL Hsu, YJ Chen, TY Sung
Journal of proteome research 14 (12), 5396-5407, 2015
152015
Adaptive learning environment to meet pedagogical needs
JM Su, SS Tseng, CT Chen, WN Tsai
Journal of information science and engineering 20 (6), 1057-1077, 2004
102004
HYPLOSP: a knowledge-based approach to protein local structure prediction
CT Chen, HN Lin, TY Sung, WL Hsu
Journal of bioinformatics and computational biology 4 (06), 1287-1307, 2006
92006
WinProphet: a user-friendly pipeline management system for proteomics data analysis based on Trans-Proteomic Pipeline
CT Chen, CL Ko, WK Choong, JH Wang, WL Hsu, TY Sung
Analytical chemistry 91 (15), 9403-9406, 2019
72019
Calibr improves spectral library search for spectrum-centric analysis of data independent acquisition proteomics
JH Wang, WK Choong, CT Chen, TY Sung
Scientific Reports 12 (1), 2045, 2022
62022
Multi-Q 2 software facilitates isobaric labeling quantitation analysis with improved accuracy and coverage
CT Chen, JH Wang, CW Cheng, WC Hsu, CL Ko, WK Choong, TY Sung
Scientific reports 11 (1), 2233, 2021
42021
iHPDM: In Silico Human Proteome Digestion Map with Proteolytic Peptide Analysis and Graphical Visualizations
WK Choong, CT Chen, JH Wang, TY Sung
Journal of proteome research 18 (12), 4124-4132, 2019
22019
UniLoc: A universal protein localization site predictor for eukaryotes and prokaryotes
HN Lin, CT Chen, TY Sung, WL Hsu
bioRxiv, 252916, 2018
22018
iTop-Q: an Intelligent Tool for Top-down Proteomics Quantitation Using DYAMOND Algorithm
HY Chang, CT Chen, CL Ko, YJ Chen, YJ Chen, WL Hsu, CG Juo, ...
Analytical chemistry 89 (24), 13128-13136, 2017
22017
The system can't perform the operation now. Try again later.
Articles 1–20