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Samuel Chaffron
Samuel Chaffron
LS2N - CNRS UMR 6004 - Nantes University
Verified email at univ-nantes.fr - Homepage
Title
Cited by
Cited by
Year
STRING 8—a global view on proteins and their functional interactions in 630 organisms
LJ Jensen, M Kuhn, M Stark, S Chaffron, C Creevey, J Muller, T Doerks, ...
Nucleic acids research 37 (suppl_1), D412-D416, 2009
28932009
Structure and function of the global ocean microbiome
S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ...
Science 348 (6237), 1261359, 2015
23952015
Population-level analysis of gut microbiome variation
G Falony, M Joossens, S Vieira-Silva, J Wang, Y Darzi, K Faust, ...
Science 352 (6285), 560-564, 2016
21212016
Eukaryotic plankton diversity in the sunlit ocean
C De Vargas, S Audic, N Henry, J Decelle, F Mahé, R Logares, E Lara, ...
Science 348 (6237), 1261605, 2015
17482015
Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota
B Stecher, R Robbiani, AW Walker, AM Westendorf, M Barthel, M Kremer, ...
PLoS biology 5 (10), e244, 2007
11732007
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria
N Delmotte, C Knief, S Chaffron, G Innerebner, B Roschitzki, ...
Proceedings of the National Academy of Sciences 106 (38), 16428-16433, 2009
9132009
Determinants of community structure in the global plankton interactome
G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ...
Science 348 (6237), 1262073, 2015
8732015
STRING 7—recent developments in the integration and prediction of protein interactions
C Von Mering, LJ Jensen, M Kuhn, S Chaffron, T Doerks, B Krüger, B Snel, ...
Nucleic acids research 35 (suppl_1), D358-D362, 2007
7952007
Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice
C Knief, N Delmotte, S Chaffron, M Stark, G Innerebner, R Wassmann, ...
The ISME journal 6 (7), 1378-1390, 2012
7332012
Plankton networks driving carbon export in the oligotrophic ocean
L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ...
Nature 532 (7600), 465-470, 2016
7072016
Patterns and ecological drivers of ocean viral communities
JR Brum, JC Ignacio-Espinoza, S Roux, G Doulcier, SG Acinas, A Alberti, ...
Science 348 (6237), 1261498, 2015
6872015
A global network of coexisting microbes from environmental and whole-genome sequence data
S Chaffron, H Rehrauer, J Pernthaler, C Von Mering
Genome research 20 (7), 947-959, 2010
5222010
Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria
B Stecher, S Chaffron, R Käppeli, S Hapfelmeier, S Freedrich, TC Weber, ...
PLoS pathogens 6 (1), e1000711, 2010
4802010
The Microbiota Mediates Pathogen Clearance from the Gut Lumen after Non-Typhoidal Salmonella Diarrhea
K Endt, B Stecher, S Chaffron, E Slack, N Tchitchek, A Benecke, ...
PLoS pathogens 6 (9), e1001097, 2010
4102010
Species–function relationships shape ecological properties of the human gut microbiome
S Vieira-Silva, G Falony, Y Darzi, G Lima-Mendez, R Garcia Yunta, ...
Nature microbiology 1 (8), 1-8, 2016
3382016
The use of next generation sequencing for improving food safety: Translation into practice
B Jagadeesan, P Gerner-Smidt, MW Allard, S Leuillet, A Winkler, Y Xiao, ...
Food microbiology 79, 96-115, 2019
2962019
Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota
RY Tito, S Chaffron, C Caenepeel, G Lima-Mendez, J Wang, ...
Gut 68 (7), 1180-1189, 2019
1852019
Tara Oceans coordinators
S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ...
Bowler C, de Vargas C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Jaillon …, 2015
1582015
Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome
AA Zayed, JM Wainaina, G Dominguez-Huerta, E Pelletier, J Guo, ...
Science 376 (6589), 156-162, 2022
1522022
Mechanically induced development and maturation of human intestinal organoids in vivo
HM Poling, D Wu, N Brown, M Baker, TA Hausfeld, N Huynh, S Chaffron, ...
Nature biomedical engineering 2 (6), 429-442, 2018
1002018
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