Sofia K. Forslund

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	All	Since 2016
Citations	23697	14865
h-index	29	24
i10-index	42	37

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Co-authors

Peer BorkEMBLVerified email at embl.de
Jaime Huerta-CepasGroup Leader at CBGP (UPM-INIA), Madrid, SpainVerified email at embl.de
Christian von MeringProfessor of Computational Biology, University of Zurich and Swiss Institute of BioinformaticsVerified email at imls.uzh.ch
Damian SzklarczykSIB Swiss Institute of Bioinformatics / University of ZurichVerified email at isb-sib.ch
Lars Juhl JensenUniversity of CopenhagenVerified email at cpr.ku.dk
Alex BatemanHead of Protein Sequence Resources, EMBL-EBIVerified email at ebi.ac.uk
Robert D. FinnSequence Families Team Leader, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambs, CB10 1SD, UKVerified email at ebi.ac.uk
Michael Kuhnstaff scientist in the lab of Peer Bork, EMBLVerified email at embl.de
Shinichi SunagawaETH Zürich; Swiss Institute of BioinformaticsVerified email at ethz.ch
Alexander RothUniversity of ZurichVerified email at uzh.ch
Daniel R. MendeAsst. Professor, Amsterdam University Medical Center, University of AmsterdamVerified email at amsterdamumc.nl
Jens Roat KultimaDanish Competition and Consumer Agency; Bioinformatics and Economic Fraud SpecialistVerified email at kfst.dk
Toni GabaldonGroup Leader, Institute for Research in Biomedicine (IRB) and Barcelona Supercomputing Centre (BSC)Verified email at crg.es
Manimozhiyan ArumugamAssociate Professor, Faculty of Health and Medical Sciences, University of CopenhagenVerified email at sund.ku.dk
Chris CreeveyProfessor of Computational Biology, Queen’s University BelfastVerified email at qub.ac.uk
Barbara HollandSchool of Natural Sciences (Maths), University of Tasmania, HobartVerified email at utas.edu.au
Korbinian StrimmerDepartment of Mathematics, The University of ManchesterVerified email at manchester.ac.uk
Daniel H. HusonProfessor of Algorithms in Bioinformatics, University of TuebingenVerified email at uni-tuebingen.de
Dr. Fabian SchreiberMedical Data Scientist, Charite Berlin

Sofia K. Forslund

Junior Group Leader, ECRC (joint Max Delbrück Center and Charité University Hospital unit), Berlin

Verified email at embl.de - Homepage

Cardiovascular and metabolic disease systems medicine evolutionary bioinformatics host-microbiome analysis antibiotic resist


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The Pfam protein families database M Punta, PC Coggill, RY Eberhardt, J Mistry, J Tate, C Boursnell, N Pang, ... Nucleic acids research 40 (D1), D290-D301, 2012	9192*	2012
STRING v10: protein–protein interaction networks, integrated over the tree of life D Szklarczyk, A Franceschini, S Wyder, K Forslund, D Heller, ... Nucleic acids research 43 (D1), D447-D452, 2015	6532	2015
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ... Nucleic acids research 44 (D1), D286-D293, 2016	1193	2016
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota K Forslund, F Hildebrand, T Nielsen, G Falony, E Le Chatelier, ... Nature 528 (7581), 262-266, 2015	1029	2015
Human gut microbes impact host serum metabolome and insulin sensitivity HK Pedersen, V Gudmundsdottir, HB Nielsen, T Hyotylainen, T Nielsen, ... Nature 535 (7612), 376-381, 2016	797	2016
Fast genome-wide functional annotation through orthology assignment by eggNOG-mapper J Huerta-Cepas, K Forslund, LP Coelho, D Szklarczyk, LJ Jensen, ... Molecular biology and evolution 34 (8), 2115-2122, 2017	674	2017
InParanoid 7: new algorithms and tools for eukaryotic orthology analysis G Östlund, T Schmitt, K Forslund, T Köstler, DN Messina, S Roopra, ... Nucleic acids research 38 (suppl_1), D196-D203, 2010	646	2010
Salt-responsive gut commensal modulates TH 17 axis and disease N Wilck, MG Matus, SM Kearney, SW Olesen, K Forslund, ... Nature 551 (7682), 585-589, 2017	407	2017
Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children K Korpela, A Salonen, LJ Virta, RA Kekkonen, K Forslund, P Bork, ... Nature communications 7, 10410, 2016	407	2016
eggNOG v4. 0: nested orthology inference across 3686 organisms S Powell, K Forslund, D Szklarczyk, K Trachana, A Roth, J Huerta-Cepas, ... Nucleic acids research 42 (D1), D231-D239, 2014	407	2014
Country-specific antibiotic use practices impact the human gut resistome K Forslund, S Sunagawa, JR Kultima, DR Mende, M Arumugam, A Typas, ... Genome research 23 (7), 1163-1169, 2013	317	2013
Towards standards for human fecal sample processing in metagenomic studies PI Costea, G Zeller, S Sunagawa, E Pelletier, A Alberti, F Levenez, ... Nature biotechnology 35 (11), 1069-1076, 2017	297	2017
The Pfam protein families database GC Hotz, K Forslund, SR Eddy, ELL Sonnhammer, A Bateman Nucleic Acids Res 36, D281D288, 2008	206	2008
Database issue RD Finn, J Mistry, J Tate, P Coggill, A Heger, JE Pollington, OL Gavin, ... Nucleic Acids Res 38, 211-222, 2010	199	2010
Coggill RD Finn, J Tate, J Mistry P. c., Sammut, SJ, Hotz, HR, Ceric, G., Forslund, K., Eddy, SR, Sonnhammer …, 2008	178	2008
Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature methods 13 (5), 425-430, 2016	140	2016
Predicting protein function from domain content K Forslund, ELL Sonnhammer Bioinformatics 24 (15), 1681-1687, 2008	103	2008
MOCAT2: a metagenomic assembly, annotation and profiling framework JR Kultima, LP Coelho, K Forslund, J Huerta-Cepas, SS Li, M Driessen, ... Bioinformatics 32 (16), 2520-2523, 2016	97	2016
Domain tree-based analysis of protein architecture evolution K Forslund, A Henricson, V Hollich, ELL Sonnhammer Molecular biology and evolution 25 (2), 254-264, 2008	90	2008
QNet: an agglomerative method for the construction of phylogenetic networks from weighted quartets S Grünewald, K Forslund, A Dress, V Moulton Molecular Biology and Evolution 24 (2), 532-538, 2007	69	2007

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