Marc Hellmuth
Marc Hellmuth
Associate Professor, Stockholm University
Verified email at - Homepage
Cited by
Cited by
Phylogenomics with paralogs
M Hellmuth, N Wieseke, M Lechner, HP Lenhof, M Middendorf, PF Stadler
Proceedings of the National Academy of Sciences 112 (7), 2058-2063, 2015
Orthology relations, symbolic ultrametrics, and cographs
M Hellmuth, M Hernandez-Rosales, KT Huber, V Moulton, PF Stadler, ...
Journal of mathematical biology 66, 399-420, 2013
From event-labeled gene trees to species trees
M Hernandez-Rosales, M Hellmuth, N Wieseke, KT Huber, V Moulton, ...
BMC bioinformatics 13, 1-11, 2012
The mathematics of xenology: Di-cographs, symbolic ultrametrics, 2-structures and tree-representable systems of binary relations
M Hellmuth, PF Stadler, N Wieseke
Journal of Mathematical Biology 75, 199-237, 2017
On the performance of de novo pathway enrichment
R Batra, N Alcaraz, K Gitzhofer, J Pauling, HJ Ditzel, M Hellmuth, ...
NPJ systems biology and applications 3 (1), 6, 2017
Reconstructing gene trees from Fitch’s xenology relation
M Geiß, J Anders, PF Stadler, N Wieseke, M Hellmuth
Journal of mathematical biology 77, 1459-1491, 2018
From sequence data including orthologs, paralogs, and xenologs to gene and species trees
M Hellmuth, N Wieseke
Evolutionary biology: convergent evolution, evolution of complex traits …, 2016
Biologically feasible gene trees, reconciliation maps and informative triples
M Hellmuth
Algorithms for Molecular Biology 12, 1-16, 2017
Best match graphs
M Geiß, E Chávez, M González Laffitte, A López Sánchez, BMR Stadler, ...
Journal of mathematical biology 78, 2015-2057, 2019
A survey on hypergraph products
M Hellmuth, L Ostermeier, PF Stadler
Mathematics in Computer Science 6 (1), 1-32, 2012
Time-consistent reconciliation maps and forbidden time travel
N Nøjgaard, M Geiß, D Merkle, PF Stadler, N Wieseke, M Hellmuth
Algorithms for Molecular Biology 13, 1-17, 2018
On symbolic ultrametrics, cotree representations, and cograph edge decompositions and partitions
M Hellmuth, N Wieseke
International Computing and Combinatorics Conference, 609-623, 2015
Best match graphs and reconciliation of gene trees with species trees
M Geiß, MEG Laffitte, AL Sánchez, DI Valdivia, M Hellmuth, MH Rosales, ...
Journal of mathematical biology 80 (5), 1459-1495, 2020
Reciprocal best match graphs
M Geiß, PF Stadler, M Hellmuth
Journal of mathematical biology 80 (3), 865-953, 2020
On tree representations of relations and graphs: Symbolic ultrametrics and cograph edge decompositions
M Hellmuth, N Wieseke
Journal of Combinatorial Optimization 36 (2), 591-616, 2018
Approximate graph products
M Hellmuth, W Imrich, W Klöckl, PF Stadler
European Journal of Combinatorics 30 (5), 1119-1133, 2009
Alternative characterizations of Fitch’s xenology relation
M Hellmuth, CR Seemann
Journal of mathematical biology 79 (3), 969-986, 2019
From pairs of most similar sequences to phylogenetic best matches
PF Stadler, M Geiß, D Schaller, A López Sánchez, M González Laffitte, ...
Algorithms for Molecular Biology 15, 1-20, 2020
Visualization of graph products
S Jänicke, C Heine, M Hellmuth, PF Stadler, G Scheuermann
IEEE Transactions on Visualization and Computer Graphics 16 (6), 1082-1089, 2010
Complete characterization of incorrect orthology assignments in best match graphs
D Schaller, M Geiß, PF Stadler, M Hellmuth
Journal of mathematical biology 82 (3), 20, 2021
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