Karsten Hokamp
Karsten Hokamp
Bioinformatics Research Officer, Smurfit Institute of Genetics, Trinity College Dublin
Verified email at
Cited by
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Initial sequencing and analysis of the human genome
ES Lander, LM Linton, B Birren, C Nusbaum, MC Zody, J Baldwin, ...
Nature 409 (6822), 860-921, 2001
A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
G Blanc, K Hokamp, KH Wolfe
Genome research 13 (2), 137-144, 2003
Modulation of the TLR-mediated inflammatory response by the endogenous human host defense peptide LL-37
N Mookherjee, KL Brown, DME Bowdish, S Doria, R Falsafi, K Hokamp, ...
The Journal of Immunology 176 (4), 2455-2464, 2006
Extensive genomic duplication during early chordate evolution
A McLysaght, K Hokamp, KH Wolfe
Nature genetics 31 (2), 200-204, 2002
An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium
C Kröger, A Colgan, S Srikumar, K Händler, SK Sivasankaran, ...
Cell host & microbe 14 (6), 683-695, 2013
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
C Kröger, SC Dillon, ADS Cameron, K Papenfort, SK Sivasankaran, ...
Proceedings of the National Academy of Sciences 109 (20), E1277-E1286, 2012
InnateDB: facilitating systems‐level analyses of the mammalian innate immune response
DJ Lynn, GL Winsor, C Chan, N Richard, MR Laird, A Barsky, JL Gardy, ...
Molecular systems biology 4 (1), 218, 2008
Circadian control of innate immunity in macrophages by miR-155 targeting Bmal1
AM Curtis, CT Fagundes, G Yang, EM Palsson-McDermott, P Wochal, ...
Proceedings of the National Academy of Sciences 112 (23), 7231-7236, 2015
Circadian clock protein BMAL1 regulates IL-1β in macrophages via NRF2
JO Early, D Menon, CA Wyse, MP Cervantes-Silva, Z Zaslona, RG Carroll, ...
Proceedings of the National Academy of Sciences 115 (36), E8460-E8468, 2018
RNA-seq brings new insights to the intra-macrophage transcriptome of Salmonella Typhimurium
S Srikumar, C Kröger, M Hébrard, A Colgan, SV Owen, SK Sivasankaran, ...
PLoS pathogens 11 (11), e1005262, 2015
The extracellular leucine-rich repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns
J Dolan, K Walshe, S Alsbury, K Hokamp, S O'Keeffe, T Okafuji, ...
BMC genomics 8, 1-24, 2007
Effect of stress on viral–bacterial synergy in bovine respiratory disease: novel mechanisms to regulate inflammation
PD Hodgson, P Aich, A Manuja, K Hokamp, FM Roche, FSL Brinkman, ...
Comparative and functional genomics 6 (4), 244-250, 2005
Altered retinal microRNA expression profile in a mouse model of retinitis pigmentosa
CJ Loscher, K Hokamp, PF Kenna, AC Ivens, P Humphries, A Palfi, ...
Genome biology 8, 1-12, 2007
Receptor‐mediated recognition of mycobacterial pathogens
KE Killick, C Ní Cheallaigh, C O'farrelly, K Hokamp, DE MacHugh, J Harris
Cellular microbiology 15 (9), 1484-1495, 2013
A Family of Vertebrate-Specific Polycombs Encoded by the LCOR/LCORL Genes Balance PRC2 Subtype Activities
E Conway, E Jerman, E Healy, S Ito, D Holoch, G Oliviero, O Deevy, ...
Molecular cell 70 (3), 408-421. e8, 2018
Bovine and human cathelicidin cationic host defense peptides similarly suppress transcriptional responses to bacterial lipopolysaccharide
N Mookherjee, HL Wilson, S Doria, Y Popowych, R Falsafi, JJ Yu, YX Li, ...
Journal of leukocyte biology 80 (6), 1563-1574, 2006
The impact of 18 ancestral and horizontally-acquired regulatory proteins upon the transcriptome and sRNA landscape of Salmonella enterica serovar Typhimurium
AM Colgan, C Kröger, M Diard, WD Hardt, JL Puente, SK Sivasankaran, ...
PLoS genetics 12 (8), e1006258, 2016
The complex relationship of gene duplication and essentiality
T Makino, K Hokamp, A McLysaght
Trends in genetics 25 (4), 152-155, 2009
A model system for studying the transcriptomic and physiological changes associated with mammalian host-adaptation by Leptospira interrogans serovar Copenhageni
MJ Caimano, SK Sivasankaran, A Allard, D Hurley, K Hokamp, ...
PLoS pathogens 10 (3), e1004004, 2014
Compensatory evolution of gene regulation in response to stress by Escherichia coli lacking RpoS
DM Stoebel, K Hokamp, MS Last, CJ Dorman
PLoS Genet 5 (10), e1000671, 2009
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