| Integrative annotation of 21,037 human genes validated by full-length cDNA clones T Imanishi, T Itoh, Y Suzuki, C O'donovan, S Fukuchi, KO Koyanagi, ... PLoS biology 2 (6), e162, 2004 | 427 | 2004 |
| Strong hydrophobic nature of cysteine residues in proteins N Nagano, M Ota, K Nishikawa FEBS letters 458 (1), 69-71, 1999 | 192 | 1999 |
| The protein mutant database T Kawabata, M Ota, K Nishikawa Nucleic acids research 27 (1), 355-357, 1999 | 179 | 1999 |
| IDEAL in 2014 illustrates interaction networks composed of intrinsically disordered proteins and their binding partners S Fukuchi, T Amemiya, S Sakamoto, Y Nobe, K Hosoda, Y Kado, ... Nucleic acids research 42 (D1), D320-D325, 2014 | 116 | 2014 |
| IDEAL: intrinsically disordered proteins with extensive annotations and literature S Fukuchi, S Sakamoto, Y Nobe, SD Murakami, T Amemiya, K Hosoda, ... Nucleic acids research 40 (D1), D507-D511, 2012 | 116 | 2012 |
| Prediction of catalytic residues in enzymes based on known tertiary structure, stability profile, and sequence conservation M Ota, K Kinoshita, K Nishikawa Journal of Molecular Biology 327 (5), 1053-1064, 2003 | 106 | 2003 |
| DNA Data Bank of Japan (DDBJ) in collaboration with mass sequencing teams Y Tateno, S Miyazaki, M Ota, H Sugawara, T Gojobori Nucleic Acids Research 28 (1), 24-26, 2000 | 104 | 2000 |
| GTOP: a database of protein structures predicted from genome sequences T Kawabata, S Fukuchi, K Homma, M Ota, J Araki, T Ito, N Ichiyoshi, ... Nucleic Acids Research 30 (1), 294-298, 2002 | 87 | 2002 |
| Stagnant motions in Hamiltonian systems Y Aizawa, Y Kikuchi, T Harayama, K Yamamoto, M Ota, K Tanaka Progress of Theoretical Physics Supplement 98, 36-82, 1989 | 85 | 1989 |
| Two distinct mechanisms for actin capping protein regulation—steric and allosteric inhibition S Takeda, S Minakata, R Koike, I Kawahata, A Narita, M Kitazawa, M Ota, ... PLoS biology 8 (7), e1000416, 2010 | 80 | 2010 |
| Genes from nine genomes are separated into their organisms in the dinucleotide composition space H Nakashima, M Ota, K Nishikawa, T Ooi DNA Research 5 (5), 251-259, 1998 | 77 | 1998 |
| Phylogeny of protein-folding trajectories reveals a unique pathway to native structure M Ota, M Ikeguchi, A Kidera Proceedings of the National Academy of Sciences 101 (51), 17658-17663, 2004 | 67 | 2004 |
| PSCDB: a database for protein structural change upon ligand binding T Amemiya, R Koike, A Kidera, M Ota Nucleic acids research 40 (D1), D554-D558, 2012 | 56 | 2012 |
| An assignment of intrinsically disordered regions of proteins based on NMR structures M Ota, R Koike, T Amemiya, T Tenno, PR Romero, H Hiroaki, AK Dunker, ... Journal of structural biology 181 (1), 29-36, 2013 | 49 | 2013 |
| A hyperthermophilic protein acquires function at the cost of stability A Mukaiyama, M Haruki, M Ota, Y Koga, K Takano, S Kanaya Biochemistry 45 (42), 12673-12679, 2006 | 49 | 2006 |
| A systematic investigation identifies a significant number of probable pseudogenes in the Escherichia coli genome K Homma, S Fukuchi, T Kawabata, M Ota, K Nishikawa Gene 294 (1-2), 25-33, 2002 | 49 | 2002 |
| Experimental verification of thestability profile of mutant protein'(SPMP) data using mutant human lysozymes K Takano, M Ota, K Ogasahara, Y Yamagata, K Nishikawa, K Yutani Protein engineering 12 (8), 663-672, 1999 | 48 | 1999 |
| Design and synthesis of a globin fold Y Isogai, M Ota, T Fujisawa, H Izuno, M Mukai, H Nakamura, T Iizuka, ... Biochemistry 38 (23), 7431-7443, 1999 | 48 | 1999 |
| Optimum particle size distribution of an electrorheological fluid M Ota, T Miyamoto Journal of applied physics 76 (9), 5528-5532, 1994 | 48 | 1994 |
| Assessment of pseudo-energy potentials by the best-five test: a new use of the three-dimensional profiles of proteins. M Ota, K Nishikawa Protein engineering 10 (4), 339-351, 1997 | 43 | 1997 |
