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Daniel Runcie
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Transcriptional regulation of nitrogen-associated metabolism and growth
A Gaudinier, J Rodriguez-Medina, L Zhang, A Olson, C Liseron-Monfils, ...
Nature 563 (7730), 259-264, 2018
2412018
Genetics of gene expression responses to temperature stress in a sea urchin gene network
DE Runcie, DA Garfield, CC Babbitt, JA Wygoda, S Mukherjee, GA Wray
Molecular Ecology 21 (18), 4547-4562, 2012
952012
The impact of gene expression variation on the robustness and evolvability of a developmental gene regulatory network
DA Garfield, DE Runcie, CC Babbitt, R Haygood, WJ Nielsen, GA Wray
PLoS biology 11 (10), e1001696, 2013
812013
Functional variants of DOG1 control seed chilling responses and variation in seasonal life-history strategies in Arabidopsis thaliana
A Martínez-Berdeja, MC Stitzer, MA Taylor, M Okada, E Ezcurra, ...
Proceedings of the National Academy of Sciences 117 (5), 2526-2534, 2020
752020
Dissecting high-dimensional phenotypes with Bayesian sparse factor analysis of genetic covariance matrices
DE Runcie, S Mukherjee
Genetics 194 (3), 753-767, 2013
672013
Fast and flexible linear mixed models for genome-wide genetics
DE Runcie, L Crawford
PLoS genetics 15 (2), e1007978, 2019
642019
Innovation, conservation, and repurposing of gene function in root cell type development
K Kajala, M Gouran, L Shaar-Moshe, GA Mason, J Rodriguez-Medina, ...
Cell 184 (12), 3333-3348. e19, 2021
602021
Applying developmental threshold models to evolutionary ecology
K Donohue, LT Burghardt, D Runcie, KJ Bradford, J Schmitt
Trends in Ecology & Evolution 30 (2), 66-77, 2015
552015
Pitfalls and remedies for cross validation with multi-trait genomic prediction methods
D Runcie, H Cheng
G3: Genes, Genomes, Genetics 9 (11), 3727-3741, 2019
502019
Gene regulatory effects of a large chromosomal inversion in highland maize
T Crow, J Ta, S Nojoomi, MR Aguilar-Rangel, JV Torres Rodriguez, ...
PLoS genetics 16 (12), e1009213, 2020
482020
The joint influence of photoperiod and temperature during growth cessation and development of dormancy in white spruce (Picea glauca)
JA Hamilton, W El Kayal, AT Hart, DE Runcie, A Arango-Velez, ...
Tree Physiology 36 (11), 1432-1448, 2016
482016
An adaptive teosinte mexicana introgression modulates phosphatidylcholine levels and is associated with maize flowering time
AC Barnes, F Rodríguez-Zapata, KA Juárez-Núñez, DJ Gates, GM Janzen, ...
Proceedings of the National Academy of Sciences 119 (27), e2100036119, 2022
41*2022
MegaLMM: mega-scale linear mixed models for genomic predictions with thousands of traits
DE Runcie, J Qu, H Cheng, L Crawford
Genome biology 22, 1-25, 2021
412021
Large-effect flowering time mutations reveal conditionally adaptive paths through fitness landscapes in Arabidopsis thaliana
MA Taylor, AM Wilczek, JL Roe, SM Welch, DE Runcie, MD Cooper, ...
Proceedings of the National Academy of Sciences 116 (36), 17890-17899, 2019
412019
Fluctuating, warm temperatures decrease the effect of a key floral repressor on flowering time in Arabidopsis thaliana
LT Burghardt, DE Runcie, AM Wilczek, MD Cooper, JL Roe, SM Welch, ...
New Phytologist 210 (2), 564-576, 2016
402016
Social environment influences the relationship between genotype and gene expression in wild baboons
DE Runcie, RT Wiedmann, EA Archie, J Altmann, GA Wray, SC Alberts, ...
Philosophical Transactions of the Royal Society B: Biological Sciences 368 …, 2013
392013
Variable prioritization in nonlinear black box methods: A genetic association case study
L Crawford, SR Flaxman, DE Runcie, M West
The annals of applied statistics 13 (2), 958, 2019
302019
Multi-omics prediction of oat agronomic and seed nutritional traits across environments and in distantly related populations
H Hu, MT Campbell, TH Yeats, X Zheng, DE Runcie, ...
Theoretical and Applied Genetics 134, 4043-4054, 2021
252021
Social network analysis of the genealogy of strawberry: retracing the wild roots of heirloom and modern cultivars
DDA Pincot, M Ledda, MJ Feldmann, MA Hardigan, TJ Poorten, ...
G3 11 (3), jkab015, 2021
252021
Two teosintes made modern maize
N Yang, Y Wang, X Liu, M Jin, M Vallebueno-Estrada, E Calfee, L Chen, ...
Science 382 (6674), eadg8940, 2023
242023
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Articles 1–20